Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02114 ATGGACGCCCTCGACTCAATCCCAAATCTCCCTCCCCTCCCTCCCTACGATCCATCGGAGTATCACAAACCGCCGCAACATCAATCGGAAACCGGAGAAAACGGTAACGGCACCAAGAACGGCGAACCATCGGAGAACGGCCAGGTCGCCGCCGACAACAACGGCTTGCATCTTCAGATTTCGAAGCCATTGCTCTCCGAAGGAATGACGCGCAGCGGCACTGACAGGGATCAATCCGGCGGCGAGGAGGAGACCACCAGCAAGCGGCGCCGCCGGAGCCGATGGGACCCGCAGCCGGAATCGAACGACCAGAGCGGTGGCGGCGATTCGGGGAGCGGACCGAAGAAGAGGAAATCTCGTTGGGCGGATGACGAGCCGAAACCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAATTCGATCCAGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGAATGTTACAGTCAGGTTTGCCCTTAGATGATCGCCCTGAAGGTGCTCGATCCCCTTCGCCTGAACCTGTATATGATAACATGGGCATTAGAATTAACACTAGGGAATATCGTGCGCGTGAGAGATTGCAAAAAGAGAGGCAGGAAATTATATCTCAGATTATAAAGAAGAACCCTGCATTTAAGCCACCTGCGGATTATAGGCCCCCCAAGCTTCAGAAGAAGCTTTATATACCGATGAAAGAATACCCTGGTTACAATTTCATTGGGCTTATTATTGGTCCTCGAGGTAACACCCAGAAGCGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTCGTGGTAAGGGATCGGTGAAAGAGGGTAGGCTTCAGCAGAAGAGGGATTTGAAACCTGACCCTTCGGAGAATGAAGATTTGCATGTGTTAGTTGAGGCAGAGACACCGGAGTCGCTTGAGGCTGCTGCGGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTATTGAATGAGCATAAGAGGCAACAGCTTAGGGAGCTTGCTGCGTTGAATGGGACGATCAGGGATGAGGAGTATTGCAGGTTGTGTGGTGAGCCTGGTCATCGCCAATATGCGTGTCCTACTAGGACATCAACGTTTAAGAGTGAAGTTGTGTGTAAGCATTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCGGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAATTTCCTTGCAGAGTTAGGAGGTTCGGTTCCTGAATCTGCAACAAAGCAAACCAGTACATTGGCAATTGGTGCAGGCACTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTACTGTTGGCGGTGCACCTCAAGCAGGCTTAGGGGCTGCTGCAGTAAAGAAGGAAATTGATGATACAAATTTGTATATAGGGTACTTGCCGCCCAATCTTGATGATGATGGCTTGATCCAATTATTTCAACAGTTTGGTGAGATTGTTATGGCGAAAGTTATCAAGGACCGGATGTCGGGTTTAAGTAAAGGATATGGTTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATCCTTGCCATGAATGGTTATCGCCTTGAGGGTCGAACAATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCGGCGTCTGCTGTGCCAACTTATCCTGTTCCAAGTCAGCCACTTGGTGCGTATCCATCCCAACAGTATACTGCTGGTGGCCCCATTGGGACTGCTCCCCCTGGGAGTTACGGTGGTGCCCCAGTGCCATGGGGACCCCCTGTTCCTCCTCCATATGCTTCCTATGCTCCTCCTCCACCTGGGTCAACTATGTATCCACCTATGCAAGGTCAACATATGCCTCCTTATGGGGTTCAATATCCTCCTCCTGTGCCGACTGGCCCTCCCGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAAGTGCAGCAGAGTTACCCACCCGGAGTGCAGTCTGACAACAATAACTCAACTCAGTCTGTACCAGCTAATATGTATGGTAACTCAGGACCTCCAATTCCACCTCAACCTACATATCCTGCATCTTATGGATATCCACCTTACTATAATGCAGTTCCTCCACCACCTCCCCCTTCTGCCCCCATGCCTGTCTCAACTTCAGatcaatcccacaacattgcaaatTGTTCCAAAAGGCCTGATGTTTCTTGGAGCTCTTGTGAACCTGATTTCTTAACCTCTTGCCATGTCTTTCTTCGAAGTTTGGGACTCACTTCTTTAACCTTGCTGTACTGTTATGAAATTTGCAGAGATTCGGGATAG 2319 0.4955 MDALDSIPNLPPLPPYDPSEYHKPPQHQSETGENGNGTKNGEPSENGQVAADNNGLHLQISKPLLSEGMTRSGTDRDQSGGEEETTSKRRRRSRWDPQPESNDQSGGGDSGSGPKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPVYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGAGTSGSNPPWANNSGTVGGAPQAGLGAAAVKKEIDDTNLYIGYLPPNLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVPSQPLGAYPSQQYTAGGPIGTAPPGSYGGAPVPWGPPVPPPYASYAPPPPGSTMYPPMQGQHMPPYGVQYPPPVPTGPPGAPSQPATSSEVQQSYPPGVQSDNNNSTQSVPANMYGNSGPPIPPQPTYPASYGYPPYYNAVPPPPPPSAPMPVSTSDQSHNIANCSKRPDVSWSSCEPDFLTSCHVFLRSLGLTSLTLLYCYEICRDSG 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02114 772 Gene3D - 349 401 - -
Gma09g02114 772 SUPERFAMILY Retrovirus zinc finger-like domains 346 392 IPR036875 GO:0003676|GO:0008270
Gma09g02114 772 ProSiteProfiles Type-1 KH domain profile. 243 315 - -
Gma09g02114 772 MobiDBLite consensus disorder prediction 616 687 - -
Gma09g02114 772 MobiDBLite consensus disorder prediction 273 294 - -
Gma09g02114 772 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 467 536 IPR000504 GO:0003723
Gma09g02114 772 CDD SF1_like-KH 229 345 - -
Gma09g02114 772 Pfam Splicing factor 1 helix-hairpin domain 117 224 IPR032570 -
Gma09g02114 772 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 228 354 IPR036612 GO:0003723
Gma09g02114 772 MobiDBLite consensus disorder prediction 629 645 - -
Gma09g02114 772 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 47 728 - -
Gma09g02114 772 ProSiteProfiles Zinc finger CCHC-type profile. 376 390 IPR001878 GO:0003676|GO:0008270
Gma09g02114 772 Gene3D - 142 219 - -
Gma09g02114 772 Pfam KH domain 243 316 IPR004088 GO:0003723
Gma09g02114 772 MobiDBLite consensus disorder prediction 163 183 - -
Gma09g02114 772 MobiDBLite consensus disorder prediction 113 127 - -
Gma09g02114 772 SMART rrm1_1 466 539 IPR000504 GO:0003723
Gma09g02114 772 SMART c2hcfinal6 375 391 IPR001878 GO:0003676|GO:0008270
Gma09g02114 772 SMART c2hcfinal6 349 365 IPR001878 GO:0003676|GO:0008270
Gma09g02114 772 ProSiteProfiles Zinc finger CCHC-type profile. 350 364 IPR001878 GO:0003676|GO:0008270
Gma09g02114 772 Gene3D K Homology domain, type 1 220 348 IPR036612 GO:0003723
Gma09g02114 772 SUPERFAMILY RNA-binding domain, RBD 461 553 IPR035979 GO:0003676
Gma09g02114 772 MobiDBLite consensus disorder prediction 646 678 - -
Gma09g02114 772 MobiDBLite consensus disorder prediction 1 132 - -
Gma09g02114 772 MobiDBLite consensus disorder prediction 28 55 - -
Gma09g02114 772 MobiDBLite consensus disorder prediction 76 98 - -
Gma09g02114 772 SMART kh_6 228 320 IPR004087 GO:0003676
Gma09g02114 772 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 543 IPR000504 GO:0003723
Gma09g02114 772 PANTHER RNA-BINDING PROTEIN RELATED 47 728 IPR045071 -
Gma09g02114 772 Gene3D - 442 547 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02114 Gma-Chr9 46714483 46718193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02114 465 672 Eukaryotic Initiation Factors Gene Family AT3G16380 26.728 5.49e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02114 K13095 - gmx:100818518 1276.15