Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02110 ATGGAGAAGAACAACAGTAAAGTCTGCAAAATCTGCAGTAAGTGCTTTTCCAGTGGAAAAGCCATGGGAGGACACATGAGATCTCACTTTGCCAAGTTGCCAATTCCACCAAAGCCCAAAACCAAGAATCAAGCACTAGACAACTCGACCGAGTTGACCCATCTTCCAACTCAATCTGCTTCCCCATTGACTTCTTATCCTCAAAAGCAACCATCGCAGAATTTCCGATCTTTGAAGCACAACGTTTTTGCCTTCTTGGCAAACTCAAATAGAGAAAATGAATCCAGGTCTTACCCTAAAAACCCTACCCGCAAAAGATCCAAATGCCACCGCAGATTTATTCCAGCGGCTGAAATGAATGCTGAAGCTGAACCAAAACAGGTGAGTTCGAAACTTGACTCTCTTATTGCAGAAGAAGCTGCTTGGACTCTATTAATGCTTTCCCGGGATAAATGGCCGGAAAGCAAAGAGACCAAGAAGCAAAAAATGAAGGGAAAAGACGGAGAAAATGGTTGCAATGACTTGCTTGTTCAAACTCAATCTCGAGCCAAGTTCCAGTGCAAGAGGTGCGGGAAAACATTTCAATCTTATCAAGCTCTTGGTGGGCACAAAGCAAACCATAAGAAAAATGAGAGTATATGCCAAGAAGGTGGTGACTCTAACGATGATGGAAGTGACAAAAATAGTGTTATTGTAGATGAGAAAGTGTTTGAGTGCCCATACTGCTCCAAAGTGTTCAAGTCTGCACGAGCACTCGGTGGACACAAAAAGGTACACTTCTCCAAGACTATAATTGCTAATGCTCAAACTACTGCAAATGAGTTTGGTGGCAGGTTGGTAGTAGATCTCAATTTTCCAGCTCCTAGAGAAGATGAAGAGGTTAGCCATATTGAATTTTTAGCAGCGTTCGGTGAAGTATGA 921 0.4267 MEKNNSKVCKICSKCFSSGKAMGGHMRSHFAKLPIPPKPKTKNQALDNSTELTHLPTQSASPLTSYPQKQPSQNFRSLKHNVFAFLANSNRENESRSYPKNPTRKRSKCHRRFIPAAEMNAEAEPKQVSSKLDSLIAEEAAWTLLMLSRDKWPESKETKKQKMKGKDGENGCNDLLVQTQSRAKFQCKRCGKTFQSYQALGGHKANHKKNESICQEGGDSNDDGSDKNSVIVDEKVFECPYCSKVFKSARALGGHKKVHFSKTIIANAQTTANEFGGRLVVDLNFPAPREDEEVSHIEFLAAFGEV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02110 306 SUPERFAMILY beta-beta-alpha zinc fingers 185 259 IPR036236 -
Gma09g02110 306 ProSitePatterns Zinc finger C2H2 type domain signature. 187 207 IPR013087 -
Gma09g02110 306 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Gma09g02110 306 SMART c2h2final6 7 29 IPR013087 -
Gma09g02110 306 SMART c2h2final6 185 207 IPR013087 -
Gma09g02110 306 SMART c2h2final6 237 259 IPR013087 -
Gma09g02110 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Gma09g02110 306 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Gma09g02110 306 Pfam C2H2-type zinc finger 8 29 - -
Gma09g02110 306 Pfam C2H2-type zinc finger 185 209 - -
Gma09g02110 306 Pfam C2H2-type zinc finger 236 259 - -
Gma09g02110 306 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 292 - -
Gma09g02110 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 212 IPR013087 -
Gma09g02110 306 Gene3D Classic Zinc Finger 182 259 - -
Gma09g02110 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Gma09g02110 306 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 292 IPR044303 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02110 Gma-Chr9 46660559 46661479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02110 9 297 C2H2 Transcription Factor Family AT3G60580 33.876 1.67e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma09g02110 zf-C2H2_6 2.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02110 - - ccaj:109798515 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02110 09 46660559 46661479 Gma09g02110 09 46660559 46661479 ECH