Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g02015 ATGGGGTCCAGTGCCAGCAAGGCCTCGTCCTCATCGTCGTCGTCGTCTTCGGGGAGTTTCAGGAAGGGTCGATCTAAGGGATACCGAGGTTTCCCATCGTATTGTCTGGGAGCCACGTCTGGATCTCGTGGCATTGATAGTGACGACCAGGTTTGTGATCAGAATAAAGTAAATGGAGATGATGTAACATACAGCAGTGGCAATGAAATAGATTCAGATGAGGGGAAGACAGAGTCTTTTAGAAAGGTTAAATCTGATGAAGTGCCTTGTGTGCCTTCTAACATTGACCTTGAGGGGTGGGGTCACACTACATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAATCAGTCCTTGAACCCTTCAAGCCGATTCCTTTCTCGCTTTAGCCTTGTTCCTGGTAATATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCGGTTTCTTCAGAGAGTCTCTCAATATTTAACAATGAAGATGAGCTTAATCTGCCTCCAGGGCTTCCTGGCAGCTTGATCAATAGAAATGAAACTCAACACCGTAGTGACTTGCTTAATGCATCTCTTGCTAGTCAAGTGCCTATACAGTGTCATCAAGAAGCTTCCAATAATTTAAGATCCAATACCCCGACACTGGTTTCCCCTGGCAACTTGGTTAGCAGTCGCACACTTTCTTCTGTTCAGGATGTTGCCAGAGATGGAAATGGTACAAGAGAAGTGCTGGATGTGAACTTGTTTTCTCCTAGAATTCATACTGATTCAGAAAACATTGAGCCTAGACTTACTGATAGACGAAATGGAGCTCGAGAGCCTGTTGAACGTAATGTTCGTTTTAGCCGGACATTAAGTGTTGGAAGGCTCCGTGACAGGGTTCTCCGCCGATCAACAGTATCAGACTTCACATTTTGCCCTTTGCAACGAGAGAGAGATGCTAGTCAAGATAATGGAAGACGGACAGGGGAGAGAGACACAAGAGTGTCACCATCTGGTCGTAATGCTGCAAATTCTTCTACACCTAGATATCCTCTACCCAGTACACCTAGCTCCTTGTTTGGCATCGAAGATTATGAAGTTGAGACTTCACAATCTAGAGAAACTAGGTATCAGGATCTACTGGAGCATAGGTCCAATTTCCTCGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTATCTGGTCAACATAGAAATGGTCGTTGTGCATGCAGAATCAATAGTCGTGATACCAATTCAAATGATGATACCAATGCAAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCTTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCATCTCGCCCTTCTGTGTCATCTATCGGTTCCGTTCCTGCACCTAATGACGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCTGTACAATGTTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTGTAGACAAGTGGCTGAAGGAGATTCACAGGGTGTGCCCACTATGTCGAGGGGATATCTGTGTATCTGATTCACTGCCAAGGGAGAACTAA 1704 0.4466 MGSSASKASSSSSSSSSGSFRKGRSKGYRGFPSYCLGATSGSRGIDSDDQVCDQNKVNGDDVTYSSGNEIDSDEGKTESFRKVKSDEVPCVPSNIDLEGWGHTTSRTGSSSAHSSSNQSLNPSSRFLSRFSLVPGNISFRLSRTTSLGSSRPCPVSSESLSIFNNEDELNLPPGLPGSLINRNETQHRSDLLNASLASQVPIQCHQEASNNLRSNTPTLVSPGNLVSSRTLSSVQDVARDGNGTREVLDVNLFSPRIHTDSENIEPRLTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTVSDFTFCPLQRERDASQDNGRRTGERDTRVSPSGRNAANSSTPRYPLPSTPSSLFGIEDYEVETSQSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRINSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNDVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCVDKWLKEIHRVCPLCRGDICVSDSLPREN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g02015 567 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 567 - -
Gma09g02015 567 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 567 - -
Gma09g02015 567 CDD mRING-H2-C3H2C2D_ZSWM2 511 554 - -
Gma09g02015 567 MobiDBLite consensus disorder prediction 315 356 - -
Gma09g02015 567 SMART ring_2 512 553 IPR001841 -
Gma09g02015 567 MobiDBLite consensus disorder prediction 56 70 - -
Gma09g02015 567 ProSiteProfiles Zinc finger RING-type profile. 512 554 IPR001841 -
Gma09g02015 567 MobiDBLite consensus disorder prediction 317 332 - -
Gma09g02015 567 MobiDBLite consensus disorder prediction 1 122 - -
Gma09g02015 567 MobiDBLite consensus disorder prediction 71 85 - -
Gma09g02015 567 Pfam Ring finger domain 511 554 IPR001841 -
Gma09g02015 567 MobiDBLite consensus disorder prediction 1 22 - -
Gma09g02015 567 MobiDBLite consensus disorder prediction 333 352 - -
Gma09g02015 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 559 IPR013083 -
Gma09g02015 567 SUPERFAMILY RING/U-box 490 560 - -
Gma09g02015 567 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g02015 Gma-Chr9 45744963 45749165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g02015 226 561 C3H Transcription Factor Family AT5G45290 62.428 3.38e-121 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g02015 - - gmx:100786091 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g02015 09 45744963 45749165 Gma09g02015 09 45744963 45749165 ECH
Gma01g01560 01 51088513 51093848 Gma09g02015 09 45744963 45749165 GST
Gma09g02015 09 45744963 45749165 Gma16g00986 16 23335705 23341759 PCT
Gma16g00986 16 23335705 23341759 Gma09g02015 09 45744963 45749165 PCT