Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01999 ATGGAGAATAACGAGATTCTAGAGGAGCTTCTCAACATCGAGGTTGAAATTCAAGATGTCCAAGAACAAATAAGGGCTTTGATCGAGAGGCAAGAGAGTTTGTACGAGAGAAAATCGGAGCTGAGTGCTATTCTGGAAGCGTGTAAGGAATCTGGAAACGAGGCCAATAATGCGGCTTCGAGCGCTGCGGAAAATTGGAGTGGGGAATTTGAATGGGATTCTGAAGCTGATGATGTTAGGTTGAATGTTTTTGGCATTTCCTCCTACCGTGCAAATCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGAGATGTTCTGGTGATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGATGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACCGCTTTGGGCATTCCAGCGTATATGTTGACTTCAACTAATAAGGGAGATGAGAAGTTCATATATAAGACTTTGGAGAAGGGAGAGGGGGAACTCAAAATATTGTATGTCACTCCAGAAAAGATTTCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGCCATCATGCTGGTCGTCTCTCTCTAATTTCAATTGATGAAGCACATTGCTGTAGTCAATGGGGTCATGACTTTCGACCTGACTACAAGAGCCTCAGTATTCTCAAGACACAGTTCCCTCGTGTTCCTATTGTTGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAATGATCTGATAGAGATGTTGCATATTCCTAGATGTGTCAAATTCGTCAGCACTGTCAATAGGCCAAACTTGTTTTATATGGTAAAGGAAAAGTCATCCGTTGGGAAGGTAGTCATTGATGAAATTGCAGAATTCATTCAAGAATCTTATCCAAATAATGAATCAGGGATTGTATATTGCTTCTCAAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTGAGGGAGAGAGGAATTTCAGCTGATTATTATCATGCCGATATGGATGTAAATGCTCGGGAAAAAGTCCACATGCGGTGGAGCAATAACAAGCTGCAGGTCATTGTTGGTACAGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTCAGGTTTGTCATCCATCACAGTTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGTCGAGCTGGCCGAGATGGACTTCCTTCTGAATGCCTACTGTACTTTAGACCCGGTGATGCTCCACGTCAGAGCTCAATGGTCTTCTACGAAAATTCAGGACTGCAGAATCTCTATGACATTGTACGATATTGTCTGTCCAAAAGACAATGCCGACGAAGTGCCTTTTTCCATCATTTTGCTGAGCCACTTCAAGAGTGCAATGGGATGTGCGACATCTGTGCATTCTCAAGTGAGGTGAAGGAAGTAGATGTCTCTGGTCATGCAAAACTGATGGTTTCATTGTTGCAAGATATGCAAGCAAATGATCAAAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAATTGAAACGGGAGGAAATTGAGCAGCTCATCTTACACCTTTTACTGGCACGGTTTTTGAAAGAAGAATTTCAGCATACACCTTATGCCACAAATGCTTACATTGCTGTGGGGTCATTGGCCAAGCAAATATTGCAAGGGAAGAAATCTGTGAAACTTGAGATTTACACTGAACAGAGAACTAAAGATGGTGTAAGGTCAGCGAAACAGTGTCTTGGGTCCTCTGGTTTGGAGCTAAAGCTTGATGAGCTGAGAAAAGAACTGTCCTCTGCTCATGGAGGAATACTCCCACACTCTGTCTTGTCCACTGAACAAATCATCCAATTAGCTTCTCAAAAACCAAACTCGCTGGAACAGGCAAGTTCTAAGCTATGTAGTTTATTGGAGAAGCTGATTGGAAAATTGAGGACAGAAAAGGCCGCAAAGAGGTTGAAGAGCAAGAAAAATCTTGTTATTATTGAATAG 2034 0.4174 MENNEILEELLNIEVEIQDVQEQIRALIERQESLYERKSELSAILEACKESGNEANNAASSAAENWSGEFEWDSEADDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTNKGDEKFIYKTLEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFPRVPIVALTATATQRVQNDLIEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDAPRQSSMVFYENSGLQNLYDIVRYCLSKRQCRRSAFFHHFAEPLQECNGMCDICAFSSEVKEVDVSGHAKLMVSLLQDMQANDQRSTMLQLVDKMKIKQKELGSELKREEIEQLILHLLLARFLKEEFQHTPYATNAYIAVGSLAKQILQGKKSVKLEIYTEQRTKDGVRSAKQCLGSSGLELKLDELRKELSSAHGGILPHSVLSTEQIIQLASQKPNSLEQASSKLCSLLEKLIGKLRTEKAAKRLKSKKNLVIIE 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01999 677 SMART ultradead3 85 287 IPR014001 -
Gma09g01999 677 Coils Coil 3 37 - -
Gma09g01999 677 Gene3D - 46 278 IPR027417 -
Gma09g01999 677 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 271 IPR014001 -
Gma09g01999 677 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 666 - -
Gma09g01999 677 Gene3D - 279 475 IPR027417 -
Gma09g01999 677 CDD DEXHc_RecQ1 71 278 - -
Gma09g01999 677 SMART helicmild6 325 406 IPR001650 -
Gma09g01999 677 SMART RQC_2 483 580 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gma09g01999 677 CDD SF2_C_RecQ 279 415 - -
Gma09g01999 677 Pfam DEAD/DEAH box helicase 91 258 IPR011545 GO:0003676|GO:0005524
Gma09g01999 677 Pfam RecQ zinc-binding 418 474 IPR032284 -
Gma09g01999 677 Pfam RQC domain 480 584 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gma09g01999 677 Gene3D - 479 579 IPR036388 -
Gma09g01999 677 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 445 IPR001650 -
Gma09g01999 677 PANTHER ATP-DEPENDENT DNA HELICASE Q1 7 666 - -
Gma09g01999 677 Coils Coil 511 531 - -
Gma09g01999 677 Pfam Helicase conserved C-terminal domain 302 405 IPR001650 -
Gma09g01999 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 421 IPR027417 -
Gma09g01999 677 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 82 505 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01999 Gma-Chr9 45607963 45618182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01999 84 419 Eukaryotic Initiation Factors Gene Family AT3G19760 19.373 2.25e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01999 K10899 - gmx:100817635 1256.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01999 09 45607963 45618182 Gma09g01999 09 45607963 45618182 ECH