Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01996 ATGGGTTACGATTCGGATAGCCCCTCGCAAGATGGGAGGGATGAAGACGACGAAGAAGAATATGAGGATTCTGGCAAGGGTAATCGTTTTCTTGGGTTCATGTTTGGAAATGTAGATAACTCTGGTGATCTCGATGTTGATTATCTTGATGAGGACGCAAAGGAGCATCTTTCTGCATTAGCTGATAAGCTGGGTCCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGACGTTGTTGAACAAGACTGTGATGTAAAAGCTGAAGACGCTGTTGATTATGAAGATATTGATGAAGAATATGATGGTCCAGAGACAGAAGCTGCCAATGAAGAGGACTATTTATTGCCAAAAAAAGAATTTTTCTCTTCTGAAGCCTCTGTATGTTTGGAATCCAAAGCTTCTGTCTTTGATGATGAAAATTATGATGAAGAATCTGAAAAGGAGCAAGACTTTGTGAATGACGATTCTAAAGTTTATAACATCCCTTTAGCTGGGGAGCAGGAAGAGAGTTTTGTGGATGCATCTAAAGAAGAGAGTTCGCTTGAACATGAATTACATGTTGACTCACCGCAGACTGAAGAGTTGGATGCTGATGTACAAAAACTTGAGGAGGATGGCCCTGAAGTTCAGAAAAGGTCTATGGCTATGCCATTGCCTGTTTTATGTGTGGAAGATGGTGTGGCAATTTTACGTTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAGCATCGACATTCTATTCCTAGAGATAGATACAAGTCTTTCGATTTAACTGATGATTTTGTAGAAGAGGATGAAGAGGAATTTCTCAAGGGCTTCTCCCAGAGTCTCTCTCTTTCTAAACAGGTTTGTGTAGTTCATAATGATGTATCAGAAAGCAATGATGTTGACTTGGAGTTTCCAAAATTTGGATTTCTTCATGCGGATGCCTCAGTGGACAGGAAAGATGATCAACAATCAAAGGACTCGTGTCATAGTGCTGAACCGATGAAAGGGGATTTTGTAGAAGATCATTTCTGGAAAGATCATCCTTTCATGTTGGCCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATAAAATCCTTTGGGGCAATTCTCCTGTTCCAAGTTATAATAATGTTGAAAGCTGTGAAATTTCTGGACCCGAGTTGGGAGCTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCATAATATTCAGATGGAGCCTCAGAAGGTACTGGAGGATAAAAATCATAATGTCTTAATGCGCAGCTCTCCTGTCAAATTGGAGCCCTTTGGCTCAAGGGATTCTTCTGGAGCTAAGACCAATTTAATATCCAGAAGTCTCTTTCACCCCCAACTTCTAAGGTTAGAATCCAGATCTGAAGTGGATAGTTCTAGTCTTGCAGATGGAAGAGATGCAGAGATATCTGAGCATAATCAAAGTGGTCAAGTGAAGCGCTTTACCAAGGTTATATCACAAAACAGAGACATGATGGAGGGCTCCTGGTTAGACAAGATAATATGGGAGGAGCTTGATCAGCCTACAGTGAAACCGAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTTAGATACCAAGGATGGTACACATCTTTGCCTTCATGCTGGGGCTATGATTTTAACTCATTCTTTAAAATTAAGCAGCGGGGATTCTTCTGAGCTACCAGGACATGGAAGTCAATATGGATGGCGATATGTTGCTAATGACAAACACTATTCAAACCGTAAAACTTCTCAGCAACTGAAATCAAATTCCAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCACAACCTGCACTGAAGCTGCAGACAATGAAATTGAAATTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCACTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAAATTATTATAAAGAGTTTGGGTGGCAAGGGGAGTAAACTGCATGTCGATGTTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGTATCAGAAACAGTGAAAACATTTTATTTGGGGAGGGAGCTTGAAGATCACAAGTCACTTGCTGCACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTACAAAGATACATTTGTGGCCAAAAGCACAAAGGGTTCCTGGTGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAGTCTGATCTGTCTGTAAAAGATGGACATGTTTTTCTGATGGAGTATTGTGAAGAAAGGCCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCAGATGACCAATCTGGCTCCTTATTACGCAACACAGATAGTAGATTGGGGCACATTATTTCCCTGGATCCTGCTGATAAATTTCCTTTCCTTGGAGATTTAAAGCCTGGTTGCAGTCAGTCATCACTAGAGACAAATATGTATAGAGCACCCATATTTCCCCATAAAGTTCCATTAACTGACTACCTGCTGGTTCGTTCATCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTCGGACAGCAGGAGCCTCTCATGGAGGTATTATCACCTGGAAGTAAAAATCTTCAGACTTACATGATGAACAGGCTATTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGACATTTGCCTCCGTATATTGGTGTTGATGAATTTCTCTCACAGTTTCCTTACCAATCAGAAGCATCATTCCGTAAGAAAATCAAGGAATATGCCAATTTACAGAGGGGAACAAATGGACAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATTTGGTCAGAGGATGAATTGAGAAAAATGGTTACACCAGAGCTTGTTTGTGCTTACGAAAGCATGCAAGCTAGCCTCTACCGTCTAAAACATTTAGGAATTACTGAAACACACCCGACTAATATTTCATCTGCAATGAGTCGTCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATCGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTTGCAATTTTGTTGCCTGTACAAGCCAGGGTAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCTTCTGGTCGTGGCATGGGTTTTAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAATGGTGAAAAAGAAAGCAGCTGCTAACCGTGGAGGTTCTACTGTTACCGGTACAGATGCTGATCTACGTAGATTAAGCATGGATGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATTGCAAAACAAACTAGGTGGCATCGCATTGCTATGATACGGAAACTTTCAAGTGAACAAGCTACATCTGGGGTTAAGGTTGATCCAACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAATGCCAGGAGATTTGGGATCGACAAGTTCAAAGTCTGTCAGCTGTAAATGGTGATGAAAATGAAAGTGATTCAGAAGGGAATAGTGATTTGGATTCTTTTGCTGGAGATCTGGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAGGGTACCAATGACTTAAAACGTGATAAGGGAGATGGCGTTAAGGGTCTTAAAATGAGAAGACGCCCAACTTTAGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCTGCTGAATTATGCAGGCTGCTTATGGATGATTATGAAGCTGACAGAAAGAAAAAGAAGAAAGCTAAAGTTATGGTGGGAGAAGCAAGATTGGTACCGAAGATGCAATCAAAATTTTCCTTTGACAATGCTGAACAAGTTAAGCAAATAACTAATACTTTACAATTAGATGGAACTAATCACTTGAAAGAGGATGCAATCACAGATCTTAGGGAGGAGGAAAACGTTCCTGCTAAAAAAAGCAAATCACTGAAGGTCAATAAAGCCAAGAAGAATGATATTATGCCTATTAGTATACCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAACCAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTAAGGCTGGGCACATGCGAACGAATAAGAACTGTCCAAAATATGGTGAAGATCTAGAAACTCAACTTGAATCTGCAGACATGGAAAAATCATCTGGAAAATCTAGCTTTGTGGATCCCTCTAGTCTCTCCCAGCATAAAGCTCCCTCCAAAAAGTCAATGTCTAAAAGCGCAACAAAAGTTGCTCCTGTTGACAATTCAACAAAAATTCCATTGAAATTCAAATGCAGCTCCACAGAGAAATCTTCTGATAAACCTGCAGTAGAAACCCTGCAGAGTTCTGACAAGCCAGTCACTTCTGACTCAGAAACTGCAAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAGAAAGTGAAACCAGATGATACGCTGGCTGAATCTCGTAAGCATGCTATTGTTATACGGCCTCCTACTGATTCAGGTAGAGGACAGGTTGATTCTCATAAGTTCCCAATTAAAATACGCCCGCCTACAGAAATAGATAGGGAGCAAAGCCACAAAAAGATTGTTATAAAGCGTACAAAGGAAGTTATTGATCTGGAACTGGACAGTCCTGGTGGAAACACTGGACTTCAACACAGAAAAACTAAAAGAATTGTTGAATTGTCAAATTTTGAGAAACAAAAGAAACAGGAGACTGTGTATGGAACTGAAGGTTTTAAAAAATGGAACAGTAAAGAGGACAGAAGATGGCGGGAAGAGCAAGAGAAATGGAGAAATGATGCAAGGCTTCGAGAAGAAGACAGAGCAAGAAGGCATCACAAAGAAGAAATCAGGATGCTCAAAGAGCAAGAAAGGTTAGACGAGATAAAAAGATTTGAAGAAGATATTAGAAGAGAAAGGGAGGAGGAAGAGCGACAAAAAGCTAAGAAGAAAAAGAAGAAGAAGAAACCTGAGTTAAGAGATGAGTATTTAGATGACCCCAGAGCAAGAAGACATGATAAGAGAATGCCAGAAAGAGACCGAAGTGGAAAAAGGAGATCTGTTACTGAGTTAGGAAAGATTGGTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGAGCGTTGTGGACACCATTGTGAAAGATAGGTATGATCTATCGTATCTTTTCTTGAAACCGGTGTCGAAGAAGGAGGCTCCCGACTACCTGGACGTTATAGAGAGGCCTATGGATCTTTCCAGAATCAGGGAGAGAGTACGGAATATGGAGTACAAGAGCCGAGAAGATTTCAGGCACGACATGTGGCAGATTACTTTTAATGCACATAAATATAACGACGGGCGAAATCCAGGAATTCCCCCGCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAGCCTCACTGAAGCAGAAGCTGGCATTGAAATTAGAGATTTCTAA 5673 0.4079 MGYDSDSPSQDGRDEDDEEEYEDSGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQDCDVKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSSEASVCLESKASVFDDENYDEESEKEQDFVNDDSKVYNIPLAGEQEESFVDASKEESSLEHELHVDSPQTEELDADVQKLEEDGPEVQKRSMAMPLPVLCVEDGVAILRFSEIFGIHEPLRKGEKREHRHSIPRDRYKSFDLTDDFVEEDEEEFLKGFSQSLSLSKQVCVVHNDVSESNDVDLEFPKFGFLHADASVDRKDDQQSKDSCHSAEPMKGDFVEDHFWKDHPFMLANFYPLDQQDWEDKILWGNSPVPSYNNVESCEISGPELGASGGSEIEIESGIHNIQMEPQKVLEDKNHNVLMRSSPVKLEPFGSRDSSGAKTNLISRSLFHPQLLRLESRSEVDSSSLADGRDAEISEHNQSGQVKRFTKVISQNRDMMEGSWLDKIIWEELDQPTVKPKLIFDLQDDQMHFEVLDTKDGTHLCLHAGAMILTHSLKLSSGDSSELPGHGSQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDVEETLSSVKAKASKKLDFKVSETVKTFYLGRELEDHKSLAAQNVQPNSLLHLVRTKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSRLGHIISLDPADKFPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPYIGVDEFLSQFPYQSEASFRKKIKEYANLQRGTNGQSILVKKRNFRIWSEDELRKMVTPELVCAYESMQASLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSCNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMDAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQATSGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDYEADRKKKKKAKVMVGEARLVPKMQSKFSFDNAEQVKQITNTLQLDGTNHLKEDAITDLREEENVPAKKSKSLKVNKAKKNDIMPISIPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGKAGHMRTNKNCPKYGEDLETQLESADMEKSSGKSSFVDPSSLSQHKAPSKKSMSKSATKVAPVDNSTKIPLKFKCSSTEKSSDKPAVETLQSSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTLAESRKHAIVIRPPTDSGRGQVDSHKFPIKIRPPTEIDREQSHKKIVIKRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETVYGTEGFKKWNSKEDRRWREEQEKWRNDARLREEDRARRHHKEEIRMLKEQERLDEIKRFEEDIRREREEEERQKAKKKKKKKKPELRDEYLDDPRARRHDKRMPERDRSGKRRSVTELGKIGADYMPPTKRRRGGGGEVGLANILESVVDTIVKDRYDLSYLFLKPVSKKEAPDYLDVIERPMDLSRIRERVRNMEYKSREDFRHDMWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTEAEAGIEIRDF 1890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1444 1480 - -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 175 200 - -
Gma09g01996 1890 SMART ubq_7 669 741 IPR000626 GO:0005515
Gma09g01996 1890 CDD Ubl_TAFs_like 669 740 - -
Gma09g01996 1890 PANTHER BNAA01G26290D PROTEIN 1398 1885 - -
Gma09g01996 1890 PANTHER BNAA01G26290D PROTEIN 14 1298 - -
Gma09g01996 1890 SMART bromo_6 1765 1876 IPR001487 GO:0005515
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1242 1268 - -
Gma09g01996 1890 SUPERFAMILY Bromodomain 1757 1879 IPR036427 GO:0005515
Gma09g01996 1890 SUPERFAMILY TAF(II)230 TBP-binding fragment 23 62 IPR036741 -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 176 200 - -
Gma09g01996 1890 Gene3D - 1770 1884 IPR036427 GO:0005515
Gma09g01996 1890 SUPERFAMILY Ubiquitin-like 662 740 IPR029071 -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1715 1748 - -
Gma09g01996 1890 Coils Coil 1661 1714 - -
Gma09g01996 1890 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 14 1298 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Gma09g01996 1890 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1398 1885 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1538 1552 - -
Gma09g01996 1890 Gene3D - 651 741 - -
Gma09g01996 1890 Gene3D - 22 68 IPR036741 -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1 30 - -
Gma09g01996 1890 ProSiteProfiles Ubiquitin domain profile. 669 739 IPR000626 GO:0005515
Gma09g01996 1890 Pfam TATA box-binding protein binding 19 61 IPR009067 -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1210 1229 - -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 66 118 - -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1563 1584 - -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1695 1748 - -
Gma09g01996 1890 Pfam Ubiquitin family 671 741 IPR000626 GO:0005515
Gma09g01996 1890 PRINTS Bromodomain signature 1789 1802 IPR001487 GO:0005515
Gma09g01996 1890 PRINTS Bromodomain signature 1803 1819 IPR001487 GO:0005515
Gma09g01996 1890 PRINTS Bromodomain signature 1819 1837 IPR001487 GO:0005515
Gma09g01996 1890 PRINTS Bromodomain signature 1837 1856 IPR001487 GO:0005515
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1659 1680 - -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1439 1525 - -
Gma09g01996 1890 ProSitePatterns Bromodomain signature. 1791 1848 IPR018359 -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1487 1523 - -
Gma09g01996 1890 Pfam Bromodomain 1777 1852 IPR001487 GO:0005515
Gma09g01996 1890 Pfam Protein of unknown function (DUF3591) 589 1155 IPR022591 -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1247 1268 - -
Gma09g01996 1890 CDD Bromodomain 1775 1871 - -
Gma09g01996 1890 Coils Coil 1271 1291 - -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 93 114 - -
Gma09g01996 1890 MobiDBLite consensus disorder prediction 1538 1584 - -
Gma09g01996 1890 ProSiteProfiles Bromodomain profile. 1786 1856 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01996 Gma-Chr9 45545846 45572718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01996 669 739 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 38.028 8.98e-07 48.9