Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01993 ATGGGCGACAATGAAGGTCATGGTGATCTCTTATCAAACAACCTTGTCATCCTACTCATTGCCATGGGTTCCGCAGCTTTCGTTGTTTCAATGTACCATGTCATAGCTATTTGCTGGTGCAACCAGCGCATCACAAACCAAAACCAACAACAACAACAACGGCCATCACAAACGACGGAGGGTACTTCCTTGGCGTCGGTGGCGCACATGATTCCAACCCACAGGTATAGCAAGAAGAAAGTTGATAGTGTGGTTCAAGGCCGATCCAACTGTGATGGTGGAGACGATGGCGACACGTGTGCGGTGTGCTTGGGAGACTTTGAAGATGGTGAGGAGTTGAGGACGATGCCTGAGTGCATGCATTCTTTCCACGTGGCATGCATTGATATGTGGCTGAGTTCGCATTCGAGTTGCCCTATTTGCCGTAGCAGTGCCACACCTTCTCAAGAGGTGCTTCACTCCGACCATGATTTCAATTATGCATATCAGCATCAACACAGCTTAGATATGTCCACGCATCAGTTCGCTGTCACACATGTGATGCGACGATGA 552 0.4891 MGDNEGHGDLLSNNLVILLIAMGSAAFVVSMYHVIAICWCNQRITNQNQQQQQRPSQTTEGTSLASVAHMIPTHRYSKKKVDSVVQGRSNCDGGDDGDTCAVCLGDFEDGEELRTMPECMHSFHVACIDMWLSSHSSCPICRSSATPSQEVLHSDHDFNYAYQHQHSLDMSTHQFAVTHVMRR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01993 183 Pfam Ring finger domain 98 142 IPR001841 -
Gma09g01993 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 148 IPR013083 -
Gma09g01993 183 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Gma09g01993 183 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 183 IPR044675 -
Gma09g01993 183 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 2 183 - -
Gma09g01993 183 SUPERFAMILY RING/U-box 93 150 - -
Gma09g01993 183 SMART ring_2 100 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01993 Gma-Chr9 45518916 45519923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01993 2 144 C3H Transcription Factor Family AT3G10910 34.266 4.05e-21 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01993 - - gmx:102660266 358.221