Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01979 ATGGCCGTGTCTCTGACACAGGGGGCGATAACGGAGATTTGCAGAGGCAATTGCTCCGAAAACTTGCAACCGGTGCTGCAGGTGATCGAGTTGAAGCAGGTGCAGTCGCAGCAAAACAGCACCGTCGAGAGGTACTGCGTGGTTCTTTCCGACGGGTCCTTTTACCAGCAAGGGATGCTCGCCACGCAGAAGAATGACTTGGTTCATTCGGGAAAGTTGCAGAAAGGTTCCGTTCTTAGACTCACTCAGTTCCTCTGCAATGTTGTCCAGAACCACAAGATTATTATCATCATTGACCTAGATGTTATACTGGACTATTGTGAGCTGATTGGACAACCTGTCTCAACACCAAAACACACACCTAAAGAACCAGGAGTCAACTTTGGGAATTCACAATCTTTAAATAGCAGTTCACATGCAGGTGGCATGAATGCTAGACCAAATGTATCTGGGTCATCTATCTATTATCCAAAAGCGAATCCTCCTGCTCGTAATGACCCTCCTGCTTATCCTAAAGCAAAGACTCTGACGCAGGGGGCGATAATGGAGATATGCAGTGGCAATGACCCCAAGAATTTGCAGCCGGTGCTGCAGGTTATCGAGTTTAAGCTGGTCCAGTCGCAGCAAAACAGCACCATTGAAAGGTACCGTGTGGTTCTCTCTGACGGTTCCTTTTACCAGCAAGGGATGCTCGCCACGCAGAAGAATGAGTTGATCTATTCTGGAAGGTTGCAGCAAGGCGCCATTATTAGACTCACACAGTTCATCTGCAATGTTGTTCAAAACCGCAAGATTATTATCATAGTTGACCTAGATGTTATATGTGAAAAATGTGAGCTGATTGGAGAACCTGTCGCAGCTCCAAAAGGTGCACCTGCAGAATCTGCCACTGGTCAATCTGGATTCACCTTTGGAAATTTGCAATATTTGGATAGGAGTTCACATTCAGGTGGTATGACTACTATACAAAATTTGGCTGGTCAATCTCTGGACTTGAAGCCAGTGCTGCAAGTTCTGGAGTTGGAGTTGGTGAACTCCCAACAACATAGCGCCTCCGTGAATTTCCATTTGGTTCTCTCCGATGGTTACCATTTCCAGCAAGCGATGCTCACGACGCAGAAGAATCAATTGGTTCGTTCTGGAAAGTTGCAAAAAGGTTCCATTGTTAGACTCACTCAGTTCGTCTGCAACGTTGTCCAGAGTTGCAAGATTATTATGGTTCTTGATCTAGATGTTGTGCTGGAGAAATGTGAGCTGTTAGGACAACCTGTTGCAGCACCTGCAGAATTTGCCACTGGTCAACCTTCTGGATTCACCTTTGGGAATTCACAATCTTTGAATAGCTGTTCACACGCAGGTGGTGTCAGTGGGCTGGCAAATGATTTTAGTGCCATGAACCTTGCCACCGGGCAAGTTACGCCTCCAGCTTATAATCCAATAAATAGCAGTAGTGATTTTGATTTTGGGATGCCAACAAACCAAGTGGGTCAACGCCACACGTCTTGGCAGTTCTCTTCTCTGATTACGAAGAAATTTTTTCAGCAAAAGCAGGCAATGGACTTCTTTTTTAAGGGAATGAACAGGGATGGATCTGAGTGTCCCTTTGATGTGAAAGACATCCAACGGTGTCCGTTTTTAAGAAACATCAATGAACCTACAAACTTCTCTTTCTCCTCAACTAAAATCTCCATTCCTGTTCATGGATCCAAGGGTCCTATATTTGAAGATGGTCCTAGTTTTGGCATGGCATTTAAGCTATTTCATGGGAAGGATGGAGTCATTCCCCTATCTGAGAAATCTGACTTTCACAATGGCAGCACAGAAGCAGATTCTCTGCCTGTTTTCAACCCTTTGGCAGGAAGAGCTGCCTCCATAAGTCTGTCTGGACCAGGTGGCCCATTTAGTTTTTGGAATTTTTCTGAGAAATGGAAGAAGCAGAAGAATTCCGAATCATCAAATAAAAAGGAATACTCACCTCAGAATGGAGATGTATCAAAGCATGAGGCACTTGGAAATGAATGGTTGGCCAAAGGAACTTGCCCAATTGCCAAGTCTTATAGAGCTGTAAGCAATGTTCTACCCCTTGTTGCAACAGCTTTTCGGCCACCGAGTGGAGTGAAGCTTAGATGTCCACATGCAATTGTTGCTGCAAGGGCTGCCCTTGCCCGTACAACCTTTGTGAAAAACATGCGCCCTCAGCCTCTTCCTGCAAAAATGCTTGTTATTGCAGCGTTAGGCATGGCGGTTAATGTGCCCTTTGGCATGTGGAAGGAGCATACCAAGAAATTTTCATTATCTTGGTTTGTAGCCGTGCATGCTGCTGTTCCCTTTATAGCCATGCTTCGGAAGTCAGTGGTGATGCCTAAATCAGCAATGGCACTGACCATTGCAGCTTCTATACTTGGACAAGTTATTGGCTCAAGAGCTGAGCGAATCCGGCTGAAAACAATAGCTGTTGAGATGGGAAAAGTGAAAACAGAGACAGTATGCAGCATGGAAAGCTATAATAGTCCCATGCAACTTGGTGATATTAGGGCCAATCACTGTGGTGCTGAAGGAATGGTCCTCAAGTCGTCACTTCCTGTGAAGGATACTGGTTCAACTTCAACTGCTGGCGTGTGTTATTGA 2628 0.4536 MAVSLTQGAITEICRGNCSENLQPVLQVIELKQVQSQQNSTVERYCVVLSDGSFYQQGMLATQKNDLVHSGKLQKGSVLRLTQFLCNVVQNHKIIIIIDLDVILDYCELIGQPVSTPKHTPKEPGVNFGNSQSLNSSSHAGGMNARPNVSGSSIYYPKANPPARNDPPAYPKAKTLTQGAIMEICSGNDPKNLQPVLQVIEFKLVQSQQNSTIERYRVVLSDGSFYQQGMLATQKNELIYSGRLQQGAIIRLTQFICNVVQNRKIIIIVDLDVICEKCELIGEPVAAPKGAPAESATGQSGFTFGNLQYLDRSSHSGGMTTIQNLAGQSLDLKPVLQVLELELVNSQQHSASVNFHLVLSDGYHFQQAMLTTQKNQLVRSGKLQKGSIVRLTQFVCNVVQSCKIIMVLDLDVVLEKCELLGQPVAAPAEFATGQPSGFTFGNSQSLNSCSHAGGVSGLANDFSAMNLATGQVTPPAYNPINSSSDFDFGMPTNQVGQRHTSWQFSSLITKKFFQQKQAMDFFFKGMNRDGSECPFDVKDIQRCPFLRNINEPTNFSFSSTKISIPVHGSKGPIFEDGPSFGMAFKLFHGKDGVIPLSEKSDFHNGSTEADSLPVFNPLAGRAASISLSGPGGPFSFWNFSEKWKKQKNSESSNKKEYSPQNGDVSKHEALGNEWLAKGTCPIAKSYRAVSNVLPLVATAFRPPSGVKLRCPHAIVAARAALARTTFVKNMRPQPLPAKMLVIAALGMAVNVPFGMWKEHTKKFSLSWFVAVHAAVPFIAMLRKSVVMPKSAMALTIAASILGQVIGSRAERIRLKTIAVEMGKVKTETVCSMESYNSPMQLGDIRANHCGAEGMVLKSSLPVKDTGSTSTAGVCY 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01979 875 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Gma09g01979 875 Pfam Replication factor-A protein 1, N-terminal domain 176 275 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gma09g01979 875 Pfam Replication factor-A protein 1, N-terminal domain 317 414 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gma09g01979 875 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gma09g01979 875 SUPERFAMILY Nucleic acid-binding proteins 175 282 IPR012340 -
Gma09g01979 875 MobiDBLite consensus disorder prediction 118 143 - -
Gma09g01979 875 CDD RPA1N 8 93 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gma09g01979 875 CDD RPA1N 179 264 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gma09g01979 875 MobiDBLite consensus disorder prediction 151 170 - -
Gma09g01979 875 MobiDBLite consensus disorder prediction 125 143 - -
Gma09g01979 875 Gene3D - 4 116 IPR012340 -
Gma09g01979 875 Gene3D - 316 426 IPR012340 -
Gma09g01979 875 Gene3D - 175 287 IPR012340 -
Gma09g01979 875 PANTHER PROTEIN, PUTATIVE-RELATED 519 870 - -
Gma09g01979 875 SUPERFAMILY Nucleic acid-binding proteins 328 419 IPR012340 -
Gma09g01979 875 CDD RPA1N 317 413 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gma09g01979 875 PANTHER PROTEIN, PUTATIVE-RELATED 519 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01979 Gma-Chr9 45439238 45447783 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01979 331 448 Core DNA Replication Machinery Family AT4G19130 39.496 1.81e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01979 - - gmx:100812465 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01979 09 45439238 45447783 Gma09g01979 09 45439238 45447783 ECH