Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01960 ATGGCTGCAAGCATAAACTGCGACATGCCCCTCACTCACCACCCTCATTGCTTCTCTCCAAAAACCGGTATTTACCACAGCAAACACTCCCCCGTGGACCTTCCCAACGACCCTTTTCTTGACCTTCTCCTACCTTTGGTCAAATCCCTTGCTTCTGGTCTTCACAGAATCGGTGTTTCACCAGGTGACGTGGTTCTGCTCCTTCTCCCTAATTCCATTTACTACCCCATTGTGTTCTTGGCTGTTCTCTATCTTGGTGCTGTTTTTACACCCTTGAATTCTCTTAGTGGTGTCTGTGAAATACGCAGGCAGAAACTTGAGCCATTGGGAATTTCTGTTATTGCTGTGCCAGAAAATGGAAAGGGTTTGAAGGATGGTTGTTTCTCATGCTTttgtgatttgatttcttgtgactttgatttGCCTAAAAGGCCTGCTATTAAGCAGGATGACACTGCTGGGATACTGTATTCTTCAGGGACTACTGCTGTGAGCAAAGGGGCTTCTCAATATGGACTCTCTTGCTTGAGGAATGTATATCTGGCAGTTTTGCCAATGTTTCATGTGAATGGTTTGTCGCTATTTGCTGTGGGATTGCTGTCTTTGGGCTCTACCGTTGTTGTCATGAGGAAATTTGACATAGATGAGGTTGTCAGGGTGATTGATGAATATAAAGTTATACACTTTCCTGTTGTTCCGCCGATGTTGACAGCACTGATAACGAGGGCAAATGGGGTTAATGGCGGTGAGAGTTTGGTACAAGTCTCCAGCAGTGCAGCACCTTTGAGCACGGGAGTTATTAATGAGTTCATCCGGGCTTTCCCCAATGTTGATTTTATACAGGGAATGACTGAGTCAACTGCAGTAGGAACACGTGGATTCAATACTGAAAAGTTTCTCAATTATTCTTCAATAGGGTTATTGGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGAATACTGGTGCATTTTTGCCCCCAGGCAGCAGTGGTGAGCTTTGGTTGAGAGGGCCTTCAATTATGACAGGATACCTGAATAACGAGGAAGCTACAATGTCAACAATTGATAAAGATGGGTTGGCTACATACTGGAGATGCTTTCAGATTGCTCCTGCCAATTTAGATGCTGTGTTAAGTTTACATCCTGAAATAGTTGATGTTGCTGTTACAGGTGCAATGGATGAAGAAACTGGGGAGATGCCAGCAGCATTGGTGGTCAGGAAGGTTGGAAGTGTGCTGTCTCCAAAGCGTATTATGGACTTTGTTGCTGAGCTGCTAGCTACCGTTGGAATTATGTTATTGTTTAGCTACCAAGACTTTTTGTCATTTGTAACTCTTCTGTGGCTGGTTGCTCCATATAAGAAGGTTAGGAAGGTTTTCTTCACTGACAAGATACCAAGGTTGACCATAGAAATAACATATTATTGGAGACACGTGTCAAATCAAAAGAACTCGGAAGATAACAATCACGCAGAGAATCCACTCTCCCCTCTTAATGGTGGAAGCCAGAACAGCCTTGAGATCGATGGTTTAGCTCGCTTTGCTGTTGAAGAACACAACAAAAAACAGAATGCCCTTTTGGAGTTTGAAAAGGTAGTAAGTGCAAAACAGCAAGTGGTTTCTGGTACCTTGTACACCATCACTTTGGAGGCAAAAGATGGTGGGCAAAAGAAGTGCTTAATTAGGTTGCAGAAGAGTGAAGAGGACAACTCGGGAACAGTACAAAAAAGGATAACAGAGAAGTCAATTTCATCACTTTTAGCGAACATATTGGAGTTCGTATATTATAGTGAGGCTGTTACTACGGTGTACCAGCTATGCAAGTGGTTTATTATGGACCACTTTGTTAGCGGTGGTTCCCTTAAGTTCGAGACTAAGGCAGTCTCCAAGAGGAAGAAAGGAAATAACAAACTTAAGCCTGAATGTTCTACGTTTTATTTGGAAGAGGAAACATCCTGCGAGCATGTCCTCCACTGGATGTTCCTTGGCAGTGCACCACTGCCGAACAGGAACACCTTGACTACTTTACCACCATTCATCTTCGTGTACGAAGGTCCACCTGTTTGCTATGATATTCCCAAGGTTGATGCTTGA 2094 0.4322 MAASINCDMPLTHHPHCFSPKTGIYHSKHSPVDLPNDPFLDLLLPLVKSLASGLHRIGVSPGDVVLLLLPNSIYYPIVFLAVLYLGAVFTPLNSLSGVCEIRRQKLEPLGISVIAVPENGKGLKDGCFSCFCDLISCDFDLPKRPAIKQDDTAGILYSSGTTAVSKGASQYGLSCLRNVYLAVLPMFHVNGLSLFAVGLLSLGSTVVVMRKFDIDEVVRVIDEYKVIHFPVVPPMLTALITRANGVNGGESLVQVSSSAAPLSTGVINEFIRAFPNVDFIQGMTESTAVGTRGFNTEKFLNYSSIGLLAPNMEAKVVDWNTGAFLPPGSSGELWLRGPSIMTGYLNNEEATMSTIDKDGLATYWRCFQIAPANLDAVLSLHPEIVDVAVTGAMDEETGEMPAALVVRKVGSVLSPKRIMDFVAELLATVGIMLLFSYQDFLSFVTLLWLVAPYKKVRKVFFTDKIPRLTIEITYYWRHVSNQKNSEDNNHAENPLSPLNGGSQNSLEIDGLARFAVEEHNKKQNALLEFEKVVSAKQQVVSGTLYTITLEAKDGGQKKCLIRLQKSEEDNSGTVQKRITEKSISSLLANILEFVYYSEAVTTVYQLCKWFIMDHFVSGGSLKFETKAVSKRKKGNNKLKPECSTFYLEEETSCEHVLHWMFLGSAPLPNRNTLTTLPPFIFVYEGPPVCYDIPKVDA 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01960 697 SUPERFAMILY Cystatin/monellin 502 566 IPR046350 -
Gma09g01960 697 Pfam AMP-binding enzyme 47 357 IPR000873 -
Gma09g01960 697 ProSitePatterns Cysteine proteases inhibitors signature. 537 550 IPR018073 -
Gma09g01960 697 Gene3D - 467 582 - -
Gma09g01960 697 Pfam Aspartic acid proteinase inhibitor 507 556 IPR000010 GO:0004869
Gma09g01960 697 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 364 467 - -
Gma09g01960 697 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 43 359 - -
Gma09g01960 697 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 12 42 - -
Gma09g01960 697 Gene3D - 42 364 IPR042099 -
Gma09g01960 697 CDD CY 504 558 IPR000010 GO:0004869
Gma09g01960 697 SUPERFAMILY Acetyl-CoA synthetase-like 46 467 - -
Gma09g01960 697 Gene3D - 365 466 IPR045851 -
Gma09g01960 697 SMART CY_4 497 580 IPR000010 GO:0004869
Gma09g01960 697 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 364 467 - -
Gma09g01960 697 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 43 359 - -
Gma09g01960 697 Pfam AMP-binding enzyme C-terminal domain 375 467 IPR025110 -
Gma09g01960 697 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01960 Gma-Chr9 45230560 45244126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01960 15 467 Monolignol Biosynthesis Gene Families AT4G19010 43.716 3.78e-131 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01960 K01904 - gmx:100804808 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01960 09 45230560 45244126 Gma09g01960 09 45230560 45244126 ECH
Gma01g00092 01 1003264 1009054 Gma09g01960 09 45230560 45244126 GST