Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01956 ATGGGTCGGAAACACGACGCCGTTTTGGTCAGCGAACCAGTCGCCGAAGAAGTTCCCTACAGCCCCGAGCTCGATTCCGAGAAGAAGAAGAAGAAGAAAAAAAGGAAGAACAAGAACAAAGACAAGCACCAAACTGATAGCAGCACCAAACGAAAGCTCGACGAACAACTCGACCCTCAAAACGGCACCGAATCGAATAAGAAGAAAAAGAAGCACCACGAGTCCAAAGAGAACGCCGAGGAAACCAACGGCAACAACAACAGTGACAACGGTGCTAATCGCGACGAAACGGTGGCGGACGGGTCCGTGGTGGTCACCGGGTTGAATGCGGGAGACGCGAAATATGCGGCGGTGAAGAGCTTCGCGGATTCGGGGCTGCCGGAGAACGTGCTGGAGTGCTGCAAGGGTTTCCAGAAGCCTTCTCCGATTCAGTCCCGAGCCTGGCCTTTCTTATTGGACGGTCGTGATTTGattggaattgctgccactggctcagGGAAGACGTTGGCGTTCGGCTTACCGGCGGTTATGCATGTTTTGGGGAAGCGGAAGGGGAAAAGTTCCAAGGGACGAAACCCTCTCGGCCTCGTGCTATCTCCCACTAGAGAGCTAGCTCAACAGATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGCAATCAATCTGTTTGTATGGTGGAACCTCTAAAGGGCCACAAATCTCCTCACTAAAATCTGGCATTGACATTATCATTGGAACTCCTGGTCGTATCCAGGATCTGATTGAAATGGGTATCTGTTGCCTAAAAGAAGTATCGTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGATATGGGTTTTGAACAAATAGTTCGCTCTATACTGGGTCAGACATGTTCTGATCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTGCCAGTTCATTACTTGGCACAGGAGTTTATGGATCCTAATCCTGTAAAAGTTGTTGTAGGCTCAGAAGACTTAGCTGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGATCGTTCTCGTGATAAGCGCCTAGCTGCTTTACTGGAAAAGTACCACAAATCTCAGAGGAATCGAGTATTGGTTTTTGTTTTGTACAAATTGGAAGCCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGTTGTATCAATACACGGGGACAAAGCCCAACATGATCGCACAAAAGCACTCTCATTGTTCAAGAATGGAAGCTGTCCTTTGATGATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGTACTGGACGAGCTGGTAAAAAGGGTGTTGCACATACATTCTTTATGCAGCAGAATAAGGGACTTGCTGGGGAGTTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTACCGGATGCCCTCCTGAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAACTTTATGGGGCACACTTCAAGGAAATCCCTGGTATCTTTCAATTGAGAAGATCCCCACCTGTTATTGGCTCCAGTTCCTTTGTGAGCGTACCTGATGAGGAGGGTGAGCAACACATTCTCTTTTACATATTCTATAATTAG 1671 0.459 MGRKHDAVLVSEPVAEEVPYSPELDSEKKKKKKKRKNKNKDKHQTDSSTKRKLDEQLDPQNGTESNKKKKKHHESKENAEETNGNNNSDNGANRDETVADGSVVVTGLNAGDAKYAAVKSFADSGLPENVLECCKGFQKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAVMHVLGKRKGKSSKGRNPLGLVLSPTRELAQQISDVMCDAGRSCGVQSICLYGGTSKGPQISSLKSGIDIIIGTPGRIQDLIEMGICCLKEVSFVVLDEADRMLDMGFEQIVRSILGQTCSDRQMVMFSATWPLPVHYLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDRSRDKRLAALLEKYHKSQRNRVLVFVLYKLEAKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQQNKGLAGELVNVLREAGQIVPDALLKFGTHVKKKESKLYGAHFKEIPGIFQLRRSPPVIGSSSFVSVPDEEGEQHILFYIFYN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01956 556 MobiDBLite consensus disorder prediction 41 80 - -
Gma09g01956 556 CDD SF2_C_DEAD 339 471 - -
Gma09g01956 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 475 IPR027417 -
Gma09g01956 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 145 IPR014014 GO:0003724
Gma09g01956 556 Gene3D - 57 328 IPR027417 -
Gma09g01956 556 PANTHER BNAA08G07020D PROTEIN 22 524 - -
Gma09g01956 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 325 IPR014001 -
Gma09g01956 556 SMART helicmild6 381 462 IPR001650 -
Gma09g01956 556 MobiDBLite consensus disorder prediction 81 95 - -
Gma09g01956 556 SMART ultradead3 136 342 IPR014001 -
Gma09g01956 556 Pfam Helicase conserved C-terminal domain 354 462 IPR001650 -
Gma09g01956 556 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 271 279 IPR000629 -
Gma09g01956 556 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 524 - -
Gma09g01956 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 501 IPR001650 -
Gma09g01956 556 MobiDBLite consensus disorder prediction 1 95 - -
Gma09g01956 556 CDD DEADc 135 326 - -
Gma09g01956 556 Gene3D - 329 504 IPR027417 -
Gma09g01956 556 Pfam DEAD/DEAH box helicase 142 308 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01956 Gma-Chr9 45193395 45198095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01956 118 470 Eukaryotic Initiation Factors Gene Family AT3G19760 33.803 9.06e-58 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01956 K14811 - gmx:100806057 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00096 01 1040407 1045045 Gma09g01956 09 45193395 45198095 GST