Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01929 ATGCCGCGTGTGCCTCCTGCTCACAAGAAAGCGCCACGTGTCCGTCCCACCCTGTCCTGCCAGTTAACGAAGACGGAGACCTACAGGGAGCGAGTTCGTAATGAAATGGTGGAAAGAAGAGTGACTTTATCAAAGGAAGTTAGAAATGGGTTAGAATTTTTGAAGCGTAAAAGGCTTCAGCGTGCAAAATCTGTCACTGCCACCCAGACAAGTGTTGCTAGCATGATGAACAGAAGTGGAGGAGATGCTTTAAGAGCTTCAGCATCATGTGGCACAAGATTTCATGGTAATGCTGATGTCTTTTCCAAGCGCAAGGTGGATAAGTTTGATACAAATGACCTGGATTGGACTGATAAAATTCCAGAATGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGATCCTTTGATTTATTTGCAAAAGATTGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTATTTCCCCTTTGAGTGCTTCAGTACCTGCTGGGGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTGCAGCCCCTTCGCCTTGCTGAATGGGATACTGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTTCGAGATTTTGAGAAAATGGCCAACAAGGTATTTGCACGAAGATATTGCAGTGCTGGATGTCTTCCTGCCACATACTTGGAAAAAGAGTTTTGGCATGAAATTGGTTGTGGAAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCATCTCCCACTGACCAGCTTGGTAACAGCAAATGGAATTTGAAGAAACTTTCGAGGTTGCCCAAATCGATTTTACGGCTCTTGGAAACATCAATTCCGGGAGTAACGGAACCCATGCTATACATTGGAATGCTGTTTAGTATCTTTGCTTGGCATGTGGAGGATCATTATTTGTACAGCATTAACTATCATCACTGCGGGGCATCAAAAACATGGTACGGTATTCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACACGTGTACACTAATGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACACTATTTCCACCAAATATTTTGTTGGAGCATGAAGTTCCTGTCTACAAGGCTGTTCAAAAGCCAGGGGAGTTTATAATAACATTCCCTAGGGCATATCACGCTGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTGTTGCTAGCAGAAGATATGCACTTCTTAACAGGGTTCCTTTACTGCCTCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTTCGTACATGCTTGGAACTTGAAGATTCTGATTTTCCTTCCTCTGACTTGTTTTCTCATAATAGCATTAAGATTTCATTTGTTAACTTGATGCGTTTCCAACATTGTGCTCGATGGTTCCTAACGAAATCAAGGGCGTGTATAAGGGTCTCTTTTCATTCCCATGCCACGATTCTCTGTAGCCTTTGCAAACGTGACTGTTACATAGCTTATGTTGACTGCAACTGTCACATGCATCCTGTATGCCTACGTCATGATGTTGATTTTCTTAACTTCAACTGTGGGAGCAAACACACACTTTATTTGAGGGAGGATATTATGGATATGGAAGCTGCAGCCAAGATGTTTGAGCACGAAGATGGGATATTGGATGAGATAAGGAAGCAAACTAAAAGTGACCAAAACATGTATGCATATCCTTTGTCAAATATGTTTCAGAGAGCTGAAGCGAATGGGTACACGCCTTATTGTGAGCTAAAACTTGATTCTGTTGTTGAATTTTATGCAACTCCAGAGCACTCAACAAATAATCAAGAATACAGTTCACAAAATCAATCTGTCATTGTACGTTGCTCTGAAAATAAAAAACCAGTGGTGTCTGAGGTTTCCTTTTCTTCTGCCACATCCACTCTTTGCTCTCTTTCAGAATCTCTCGAGAGCTTTTCTGCTCCCAAAAATGCTGAGGAGCATATTAACAACAATGCAAGTATTATTGATTTTGAAGAGTTTGCTGAAAGAATATCCAACAGTGCATGTGAATCTTCATTATCTCCTGCTGTGTATCATGAAAGCTCGGTTAAACCACTGGGTGATCTTCAGAAGAGATTTGATACAAAATCCATTGTGGACGAGAGTGATGATTCTGATTCAGAGATATTTAGGGTAAAGCGTCCTTCTTCTCTGAAAGCAGAGAGGAGAAATATGAATGATGCCGTGCCTTCAAAACATACAGAGCAGCAGGGGCTAAAACGACTGAAGAAAATCCTTCCTGAAGGAAAGAGTGGGCAACCAATGGATTCTAGCAGAAGCAATGAATCAAGTTACAAATACAGTCACGCTGTTAACCATAAAGGTCATGCTGATATTTCATCCAGGGATAGATTTGCAAGGAGTAATGGTATTCCCATTTCTATAAGATATAAGAAGTTGGGCAACGAGGAAATAAGCATGCAAGGAGATCACCACCAAAGAGATAGGTTGCAACAGACATTTAGGGAACCACCTTCCATGGAGCTTGAGCCAAAGCGCCTTAAAGTCCGAGGCCCTTCATTTTTAGGCTTAGAGAGCAGATCGAATTGA 2679 0.4132 MPRVPPAHKKAPRVRPTLSCQLTKTETYRERVRNEMVERRVTLSKEVRNGLEFLKRKRLQRAKSVTATQTSVASMMNRSGGDALRASASCGTRFHGNADVFSKRKVDKFDTNDLDWTDKIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPATYLEKEFWHEIGCGKMETVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSILRLLETSIPGVTEPMLYIGMLFSIFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHEVPVYKAVQKPGEFIITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAVASRRYALLNRVPLLPHEELLCKEAMLLRTCLELEDSDFPSSDLFSHNSIKISFVNLMRFQHCARWFLTKSRACIRVSFHSHATILCSLCKRDCYIAYVDCNCHMHPVCLRHDVDFLNFNCGSKHTLYLREDIMDMEAAAKMFEHEDGILDEIRKQTKSDQNMYAYPLSNMFQRAEANGYTPYCELKLDSVVEFYATPEHSTNNQEYSSQNQSVIVRCSENKKPVVSEVSFSSATSTLCSLSESLESFSAPKNAEEHINNNASIIDFEEFAERISNSACESSLSPAVYHESSVKPLGDLQKRFDTKSIVDESDDSDSEIFRVKRPSSLKAERRNMNDAVPSKHTEQQGLKRLKKILPEGKSGQPMDSSRSNESSYKYSHAVNHKGHADISSRDRFARSNGIPISIRYKKLGNEEISMQGDHHQRDRLQQTFREPPSMELEPKRLKVRGPSFLGLESRSN 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01929 892 PANTHER LYSINE-SPECIFIC DEMETHYLASE 88 888 - -
Gma09g01929 892 MobiDBLite consensus disorder prediction 761 790 - -
Gma09g01929 892 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 88 888 - -
Gma09g01929 892 SMART cupin_9 267 440 IPR003347 -
Gma09g01929 892 MobiDBLite consensus disorder prediction 846 878 - -
Gma09g01929 892 Pfam jmjN domain 124 156 IPR003349 -
Gma09g01929 892 SUPERFAMILY Clavaminate synthase-like 201 456 - -
Gma09g01929 892 MobiDBLite consensus disorder prediction 845 892 - -
Gma09g01929 892 Gene3D Cupin 116 445 - -
Gma09g01929 892 ProSiteProfiles JmjC domain profile. 270 440 IPR003347 -
Gma09g01929 892 ProSiteProfiles JmjN domain profile. 123 164 IPR003349 -
Gma09g01929 892 MobiDBLite consensus disorder prediction 761 810 - -
Gma09g01929 892 MobiDBLite consensus disorder prediction 796 810 - -
Gma09g01929 892 Pfam C5HC2 zinc finger 520 571 IPR004198 -
Gma09g01929 892 Pfam JmjC domain, hydroxylase 300 423 IPR003347 -
Gma09g01929 892 SMART JmjN_1 122 163 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01929 Gma-Chr9 44898910 44905700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01929 120 579 JUMONJI Transcription Factor Family AT2G34880 32.642 3.31e-63 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gma09g01929 JmjC 1.3e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01929 - - gmx:100798611 1704.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01929 09 44898910 44905700 Gma09g01929 09 44898910 44905700 ECH
Gma01g00129 01 1453467 1460032 Gma09g01929 09 44898910 44905700 GST