Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01916 ATGCAACAGCGCGCGGCGGAAGACTCCTCCTCCTTCACTCCGAACCCTTCTTCTCCTCACCAAAATTTTGGCCAACCAAACCACCGCAAGCCCGCACGTAGGAACCGAGGTCCACAACAGCACCACCACCACCAGAACTTGCAATACCGTGTCGTCAGCATGCCCGAACCGGCTCCTTCTTCTTCCAATTCTCACTCCGTGGAGGACAATGTAAACGTTGAAGCCACTGGCACGCCGCAAAATCGCCATAACAAGGACGGTGCCGGTGCCTCCGAGATCAACACCGTTGACGGCTCCGATCGCGTGGCTAGTTCAAGCAAGGCCGAGGAAGGAGACGGTGATGATAATGATGATTATATTCAAGCCAGGGTTGATAAGTTGCTCTGTAAAATCGAGGAACCTGAATTGTCCGAGGAACAGATCAGAATCAATGATCAATCGCAGCAAGATGAGATACTTGTGGTGGAGTCAATTTATGGAGAAAACGTTTTCAGCCTTGAGAGGTGGAAAGGCCTGCGTTGTTTTCAGATACATATAAATGTTGATGTTTTGGGTGAAATTGCCATTACTGCTAACCTAAACTCTATCAATCAACTTGAGACTCTAAGCAGCAATTCAGATGAGTTCTTGTACACTTTCAAAGTTCAATATCTACCACCAATTGTTTTGACGTGTTTATTACCTAAGTCGTACCCAAGCGACCAACCACCTATTTTTACACTCTCTGTTAAGTGGTTGGAACCTGTGAAGATTCTGAATCTGTGCTACAAGTTGGATTCAATATGGGAAGAACAACAGGGTCAGGAAGTGATTTACCCTTGGGTAGAATGGTTACATAGTTCTTCTCTTTCTCATCTGGGATTTGATGAGGAAATCATACTTGGGCCTTATGGCATGAATTATGTCCAGGATGAGCGTGTTATTTCAGGAGCTGAATGCATTGATGTTGATATTCCTTTTTTACGAAGTTACAACGATGAGAGACACAATGAGAACTTCCTCAAAGAATTGCATGATTGTAACATTTGCTTTAGTGAATATGCAGGCTCTCAGTTCATCCGGTTACCATGTGAGCATTTTTTTTGCCTCAAATGCTTGCAGACCTTTGCCCAGATACATGTAAAGGAAGGCACTGTTAGTAATCTTAAATGTCCTGAAGCAAAATGTGCAATTATGATTCCTCCTGGCCTTTTAAAACAATTGCTGGATGACACAGATTATGAGCGCTGGGAATCCATGATGTTGGAAAAAACACTTGCATCAATGTCTGATGTTGTTTATTGTCCAAGGTGTGAAACACCCTGCATAGAGGATGAAGACCAGCATGCTCAATGCCCAAAATGTTACTTTAGCTTTTGTACCCTTTGCAGGGAACGACGCCATGTTGGCATAGCATGCATGAGTCTAGATATGAAGCTTCAGATTTTGCAGGTATGGTATTTGAATCCATAA 1452 0.4373 MQQRAAEDSSSFTPNPSSPHQNFGQPNHRKPARRNRGPQQHHHHQNLQYRVVSMPEPAPSSSNSHSVEDNVNVEATGTPQNRHNKDGAGASEINTVDGSDRVASSSKAEEGDGDDNDDYIQARVDKLLCKIEEPELSEEQIRINDQSQQDEILVVESIYGENVFSLERWKGLRCFQIHINVDVLGEIAITANLNSINQLETLSSNSDEFLYTFKVQYLPPIVLTCLLPKSYPSDQPPIFTLSVKWLEPVKILNLCYKLDSIWEEQQGQEVIYPWVEWLHSSSLSHLGFDEEIILGPYGMNYVQDERVISGAECIDVDIPFLRSYNDERHNENFLKELHDCNICFSEYAGSQFIRLPCEHFFCLKCLQTFAQIHVKEGTVSNLKCPEAKCAIMIPPGLLKQLLDDTDYERWESMMLEKTLASMSDVVYCPRCETPCIEDEDQHAQCPKCYFSFCTLCRERRHVGIACMSLDMKLQILQVWYLNP 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01916 483 Gene3D Ubiquitin Conjugating Enzyme 137 286 IPR016135 -
Gma09g01916 483 ProSiteProfiles RWD domain profile. 150 285 IPR006575 GO:0005515
Gma09g01916 483 SUPERFAMILY UBC-like 145 280 IPR016135 -
Gma09g01916 483 Pfam IBR domain, a half RING-finger domain 408 466 IPR002867 -
Gma09g01916 483 MobiDBLite consensus disorder prediction 1 25 - -
Gma09g01916 483 ProSitePatterns Zinc finger RING-type signature. 357 366 IPR017907 -
Gma09g01916 483 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 88 475 - -
Gma09g01916 483 MobiDBLite consensus disorder prediction 27 43 - -
Gma09g01916 483 SUPERFAMILY RING/U-box 335 419 - -
Gma09g01916 483 MobiDBLite consensus disorder prediction 55 88 - -
Gma09g01916 483 MobiDBLite consensus disorder prediction 1 119 - -
Gma09g01916 483 Pfam RWD domain 146 280 IPR006575 GO:0005515
Gma09g01916 483 SMART ibrneu5 408 466 IPR002867 -
Gma09g01916 483 SMART ring_2 340 387 IPR001841 -
Gma09g01916 483 ProSiteProfiles TRIAD supradomain profile. 336 483 IPR044066 -
Gma09g01916 483 ProSiteProfiles Zinc finger RING-type profile. 340 388 IPR001841 -
Gma09g01916 483 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 88 475 IPR031127 GO:0004842|GO:0016567
Gma09g01916 483 SMART RWD2001b 150 285 IPR006575 GO:0005515
Gma09g01916 483 SUPERFAMILY RING/U-box 408 470 - -
Gma09g01916 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 423 IPR013083 -
Gma09g01916 483 Pfam zinc-RING finger domain 340 385 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01916 Gma-Chr9 44792167 44795072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01916 340 473 ARIADNE family AT2G31780 21.429 9.31e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01916 K11971 - gmx:100500662 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01916 09 44792167 44795072 Gma09g01916 09 44792167 44795072 ECH
Gma01g00143 01 1573536 1581338 Gma09g01916 09 44792167 44795072 GST