Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01913 ATGGGAAGGTCACCGTGTTGTGAGGAGAGTAGTAGTGTAAAGAAAGGGCCATGGACGCCAGAAGAAGATGAGAAGCTGATTGATTATATCAGCAAACATGGCCATGGCAGCTGGAGAACACTTCCAAAGCGTGCTGGTCTCAATAGGTGTGGCAAAAGCTGCAGATTAAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGCAAGTTCAGTGAAGATGATGAGAGGATTATCATCAACTTTCATTCAGTTCTCGGAAACAAGTGGTCGAAGATTGCAGCACATCTGCCAGGAAGAACTGATAATGAGATAAAGAATTATTGGAACACTCACATAAGGAAAAAGCTTCTGAAGATGGGTATTGATCCAGAAACTCACAAGCCAAGGACAGACTTGAATCACCTCATGAGTCTTTCTCAGTTGCTTGGCATGTCAAACTTGAGCAGTGCCATTAGCACTGCTTGGGGCAATAAGCCTCTAGGTTTACAGCCAGATATCACTCAGCTAGCCAAAATACAACTTGTGCAAAATCTTTTGCAACTTATCAACAACAATTCATTTGTTAACATTGGAAATAATAACCCTTACCTCTTATCCAATCCCAACCTCAACCCTTTATTTCTGAATGGCATAAACCCCCTCCAAACTAATAAGGAGCCTCATGTGGTGTTGAGTGGTAGTGAAGAATATGCTAACCCTGGTTTATACTCTCAAGCACAAAGCCAGTGCTCTCAGCATGATGTTTCAAAATCATTGGCAGATTTAGATGGTGGATCTATTCCACAAGATTACAACAAAATTAACAGCACTACTACTTCACGTGAAAATCTAGCAGAAAATCCACCTCTTCCTGCATTAGTTGCATTCCCTCCAAAGATGGGAACCTTCAACCAAATGGACAGTGGCTGTAATATAGCTGCTCAAACGTCAACAGAGTCACCTTCCAACACAATCTTTGATGATTGGGAGAAGTTGCTTGACGATGAAACAAGCGGTTCCTATTGGAAAGAGATTCTAGACTTGACATCCACTTCTGCGTCACCAATTTTGTGGTAG 1059 0.4212 MGRSPCCEESSSVKKGPWTPEEDEKLIDYISKHGHGSWRTLPKRAGLNRCGKSCRLRWTNYLRPDIKRGKFSEDDERIIINFHSVLGNKWSKIAAHLPGRTDNEIKNYWNTHIRKKLLKMGIDPETHKPRTDLNHLMSLSQLLGMSNLSSAISTAWGNKPLGLQPDITQLAKIQLVQNLLQLINNNSFVNIGNNNPYLLSNPNLNPLFLNGINPLQTNKEPHVVLSGSEEYANPGLYSQAQSQCSQHDVSKSLADLDGGSIPQDYNKINSTTTSRENLAENPPLPALVAFPPKMGTFNQMDSGCNIAAQTSTESPSNTIFDDWEKLLDDETSGSYWKEILDLTSTSASPILW 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01913 352 Gene3D - 14 67 - -
Gma09g01913 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 343 - -
Gma09g01913 352 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gma09g01913 352 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma09g01913 352 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gma09g01913 352 SMART sant 14 64 IPR001005 -
Gma09g01913 352 SMART sant 67 115 IPR001005 -
Gma09g01913 352 PANTHER MYB TRANSCRIPTION FACTOR 1 343 - -
Gma09g01913 352 CDD SANT 70 113 IPR001005 -
Gma09g01913 352 Gene3D - 70 136 - -
Gma09g01913 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Gma09g01913 352 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Gma09g01913 352 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gma09g01913 352 CDD SANT 17 62 IPR001005 -
Gma09g01913 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01913 Gma-Chr9 44747470 44749764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01913 1 341 MYB Transcription Factor Family AT5G16770 45.902 1.22e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma09g01913 Myb_DNA-binding 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01913 K09422 - gmx:100810159 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01913 09 44747470 44749764 Gma09g01913 09 44747470 44749764 ECH
Gma01g00147 01 1620919 1623411 Gma09g01913 09 44747470 44749764 GST
Gma09g01913 09 44747470 44749764 Gma16g00836 16 14930388 14931286 PCT
Gma16g00836 16 14930388 14931286 Gma09g01913 09 44747470 44749764 PCT