Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01907 ATGGCTACTTTAGAATCAGCTCTCACTCTCTTCGCACCTCAACGGTTCTCTGCAAAAGCACCAATCTCCATCAAGCTCCATGCTTCCACCTCCCATATCTTCTCTTCCAAGTCCTTCTTCAAAACCGGAAGACTCTGCTTCCAGTTATGCTCCACTCTGCAAGAGGTAACACCAACAGAGCAAACACTTGAGCCTATCCAACCAACAGACAACGTAAAGAAGCTCTACGTAGTTAACTTGTCTTGGTCTCTGACGGCGGCAGACATCACTGACCTCTTTGCCCAATGCGGAACCGTAACTGACGTCGAGATAATAAAGAGCAAAGATGGGAGGAGCAAGGGCTATGCCTTCGTTACTATGGCTTCCGGGGAAGAGGCTCAAGCTGCTGTTGATAAATTTGACTCTTATGAATTATCAGGACGGATAATACGGGTAGAACTTGCAAAGAGATTAAAAAAACCTCCTTCTCTTCCACCTCCTCCAGGTCCCCGTCCTGGAGAGACACGCCATGTAATTTATGCATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGACAAGTCTTCGCTGAAAATTTCAAAACGCCATCGTCAGCCAGGGTTGTCTTTGACAGCCCTTCTGGACGATCTGCTGGGTACGGATTTGTTTCTTTTCTTACCAGGGAGGATGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGTTAATGGGACGACCGCTTCGCCTAAAATTCAGTGAAAAGAATAAAGAAGCTGGAAGTCAAAATGATGAAGACCAAATTAAGGATGCTGGAAGTGAAGAAGATGAAGACCAAGATAGGCACAAATCTAACAAAATTGCGTGGCTTCATAAAGAAGGAAATCCGTACGTCCAGCAAGTTAAGTTGAAAAGAGAAGAGGAGATGGCCCAAGGGTTTGAGCAAATGCTGCTCCAGTTATGGTTTTGTAACCTCTCTAAGTTCAATTCTTTTGTTGTTAGTGGCAACCCAAAAACTTGGGTTCCATACATGAACAACAAAGACTGTTCACAAGGATTTTGTAGCTTGTATTGTCCACAGTGGTGCTATGTAATCTACCCTCCTCCTCCTCCTCCCTTTGAATTTCCCAGTGATGATTCAAGTCCAAATTTCTCACCTCTAGTTATTGCAGTCATTGGAGTCTTAGCCAGTGCTTTTCTTCTAGTGAGCTACTACACCATAATATCCAAGTACTGTGGCAACAGAGAATCTTCACAAAGCGAAGAGCACGAAGAAAACGTTGAATTGGAAGAAGATGATCACAACCCTTCACACCACGAGCCTTGGCATGCTTCAACAATTGGCTTGGATGAGGCTTTGATAAAGTCCATAACAGCTTGCAAGTACAAGAAAGGTGATGGATTGGTTGAGGTAACAGATTGCTCCGTTTGTCTCAGCGAGTTTCGAGATGATGAAAGTGTTAGGCTCTTGCCAAAATGCAGCCACGCTTTTCATCTTCCTTGCATTGACACATGGCTGAAATCTCACTCTAGTTGCCCTCTATGCCGTGCTAGCATATTCACCTTCAATGCTGCAGCAGCACTTCATGTTGCTGCGACGGTCACGGAACCAACTTCAAGAAACGATACCACTTCAGGAAACAGACATGCAGATGATGAAAACGTTGTTGCTGTTGCAGGGGACAGTGAATCGGATGCTGTTGAAGGAGAATCAGTCACACTCTCACATGGTGGAGCGGTTTCAAAGAGTGCATTGCGTGTTTTGAGTGATCTAGGAAACTTGAGAGGGAGGCATAGTGTAATTGAGATTAGAGATGAAGGGTATGATTCCATTAGAAGGACGGTTTCAATGGACCATTCGTTTCAAAGGGGTAGTGGTCTTTCAATTGCTGATGTTCTGCATGTGAATCAAGAGCATGAAGGGTGTTCTAATGGGGCTGGTCCTTCAAAGAATTCAAGAGGTGAAAGTAGCAAGTCTAGCTACAGGAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAAAGATCATTTTCTAGTGGAAGGTTCTCCCTTAGCAGAAATGGCAGAGGAAAGCAATGGGTTCTGCCTGTCTGA 2082 0.4472 MATLESALTLFAPQRFSAKAPISIKLHASTSHIFSSKSFFKTGRLCFQLCSTLQEVTPTEQTLEPIQPTDNVKKLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSKDGRSKGYAFVTMASGEEAQAAVDKFDSYELSGRIIRVELAKRLKKPPSLPPPPGPRPGETRHVIYASNLAWKARSTHLRQVFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAISTVDGKELMGRPLRLKFSEKNKEAGSQNDEDQIKDAGSEEDEDQDRHKSNKIAWLHKEGNPYVQQVKLKREEEMAQGFEQMLLQLWFCNLSKFNSFVVSGNPKTWVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPPFEFPSDDSSPNFSPLVIAVIGVLASAFLLVSYYTIISKYCGNRESSQSEEHEENVELEEDDHNPSHHEPWHASTIGLDEALIKSITACKYKKGDGLVEVTDCSVCLSEFRDDESVRLLPKCSHAFHLPCIDTWLKSHSSCPLCRASIFTFNAAAALHVAATVTEPTSRNDTTSGNRHADDENVVAVAGDSESDAVEGESVTLSHGGAVSKSALRVLSDLGNLRGRHSVIEIRDEGYDSIRRTVSMDHSFQRGSGLSIADVLHVNQEHEGCSNGAGPSKNSRGESSKSSYRRRVLHCVLSPIAMKRSFSSGRFSLSRNGRGKQWVLPV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01907 693 MobiDBLite consensus disorder prediction 414 435 - -
Gma09g01907 693 MobiDBLite consensus disorder prediction 246 280 - -
Gma09g01907 693 SUPERFAMILY RING/U-box 448 516 - -
Gma09g01907 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 249 IPR000504 GO:0003723
Gma09g01907 693 SUPERFAMILY RNA-binding domain, RBD 153 254 IPR035979 GO:0003676
Gma09g01907 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 172 243 IPR000504 GO:0003723
Gma09g01907 693 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 143 IPR000504 GO:0003723
Gma09g01907 693 Gene3D - 51 153 IPR012677 -
Gma09g01907 693 SMART rrm1_1 74 146 IPR000504 GO:0003723
Gma09g01907 693 SMART rrm1_1 171 245 IPR000504 GO:0003723
Gma09g01907 693 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 329 684 - -
Gma09g01907 693 SMART ring_2 468 509 IPR001841 -
Gma09g01907 693 MobiDBLite consensus disorder prediction 633 654 - -
Gma09g01907 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 443 517 IPR013083 -
Gma09g01907 693 Pfam Ring finger domain 467 510 IPR001841 -
Gma09g01907 693 ProSiteProfiles Zinc finger RING-type profile. 468 510 IPR001841 -
Gma09g01907 693 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 329 684 IPR044675 -
Gma09g01907 693 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Gma09g01907 693 SUPERFAMILY RNA-binding domain, RBD 59 154 IPR035979 GO:0003676
Gma09g01907 693 CDD RING-H2_PA-TM-RING 467 510 - -
Gma09g01907 693 Gene3D - 154 262 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01907 Gma-Chr9 44685730 44695157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01907 328 644 C3H Transcription Factor Family AT3G03550 43.072 1.51e-66 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01907 - - gmx:100792799 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01907 09 44685730 44695157 Gma09g01907 09 44685730 44695157 ECH
Gma01g00155 01 1678788 1680191 Gma09g01907 09 44685730 44695157 GST