Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01898 ATGAATCTGTGGACGGACGAGAACTCCTCGGTGATGGAGGCCTTCATGCCATCCTCCGATCTCTCCTCCATCTGGCCCCCTCCCGCTCCTCCGCAGCCGCAATCCACGGCGGTCTTCAATCAGGACACCCTCCAGCACCGCCTCCAGGCCTTAATCGAGGGCGCCCGAGAGACCTGGACCTACGCCATCTTCTGGCAGTCCTCTTACGACTATTCCGGCTCCACTCTCCTCGGTTGGGGCGACGGTTACTACAAAGGCGACGACGACAAAGCCAAGGCAAAGGCCAAGTCCAAAGCCACCTCCGCCGCCGAGCAGGACCACCGCAAAAAGGTTCTCCGGGAACTTAACTCCCTCATCTCCGGCTCCTCCTCCGCTTCCGCCTCCGACGACGTCGACGAGGAAGTCACCGACACCGAGTGGTTCTTCCTCGTCTCCATGACGCAGTCCTTCGTCAACGGCGGAGGACTGCCCGGACAGGCCTTCTTCAACTCGACCCCCGTTTGGGTCACCGGGAGTGACCGTCTCTCTGCCTCGCCCTGCGAGAGGGCGAGGCAGGGACATATGTTCGGCTTGCAAACCTTAGTTTGCATACCGTCCGCGAACGGCGTCGTTGAACTGGGTTCCACCGAGTTAATTTTCCAGAACTCGGATCTGATGAACAAGGTGAAGGTTCTCTTCAATTTTAGCAACAACAACTTCGACATGGGTTCTTCTTGGCCCGCCACCAGCGCCGATCAAGGCGAAAACGACCCTTCCTCGCTCTGGCTCAGCGATCCCGAAGTTAGGGATTCCGTTAACACTGCTGCTGCTACCCCTTCGGTCATGGTTCCTGCACAGACTCAGGGGATTTCGATTTCAAAGACGATGCAGTTAGAGAGTTCTATTCAAACCCCTGGTTCGAGTACTTTAACCGAAACCCCTAGTTCTATTCACGCGATTCCGCAGAACCAGAGCGTGTTCTCCAGAGAATTGAACTTCTCTGAGTACGGGTTCGACCCAAAGAGTGGGAACAATCAGAATCACCATTCTCTGAAGCCGGAATCCGGCGAGATTCTCAGCTTCGGCGAGAGCAGGAGAACCTCCTACGGCGGCGTCAATGGGAATACTAATACCAATACCAATTCCAATTCCCATTTTTTCTCCGGCCAGTCACCGTTTGTTGCTGCTGTGGATGAAAACAAGAAGAATAACATGAGCAACAACGGGAAGAAAAGGTCACCGAATTCGCGTGGCAGCAACGACGATGGAATGCTTTCTTTCACCTCCGGCGTGATTATTCCGGCCACGAATTTGAAGTCCGGCGGAGGCGGCGATTCCGACCACTCGGATCTGGAGGCTTCGGTGGTGAAGGACCCGGTGGTGGAGCCGGAGAAGCGGCCGCGTAAGAGAGGGCGGAAGCCGGCGAACGGAAGAGAGGAACCATTAAACCATGTTGAAGCAGAGAGACAGAGGAGGGAGAAGCTGAACCAGAGATTCTACGCGCTTCGTGCTGTGGTTCCCAACGTGTCAAAGATGGACAAAGCGTCGCTTCTGGGCGACGCGATATCTTACATCACCGAGCTGAAGTCCAAGCTTCAGACCCTCGAATCTGATAAAGATGTATTGCATAAGCAGCTTGAAGGAGTGAAGAAGGAACTCGAGAAAACAACCGATAACGTTTCTTCTAATCACGCGTGTAATAATAACAATAACAACAAGTTGTCGTCGAATCAGCCGGCGTTAATTGACTTGGTTGAGATGGACGTGAAGATCATTGGGTGGGACGCGATGATAACGATCACATGCAGCAAGAAGAACCACCCCGCGGCGACGTTGATGACGGCATTGATGGAGTTGGACTTGGACGTGCACTACGCCACCGTAACGTTGGTCAACGATTTGATGATCCAACAAGCAACGGTGAAGATGGGAAGTAGATTTTACACGCAGGAGCAGCTTCGAGCGGCGCTGTCGGCTAAGGTTGGGGATGTACGATGA 1977 0.5412 MNLWTDENSSVMEAFMPSSDLSSIWPPPAPPQPQSTAVFNQDTLQHRLQALIEGARETWTYAIFWQSSYDYSGSTLLGWGDGYYKGDDDKAKAKAKSKATSAAEQDHRKKVLRELNSLISGSSSASASDDVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAFFNSTPVWVTGSDRLSASPCERARQGHMFGLQTLVCIPSANGVVELGSTELIFQNSDLMNKVKVLFNFSNNNFDMGSSWPATSADQGENDPSSLWLSDPEVRDSVNTAAATPSVMVPAQTQGISISKTMQLESSIQTPGSSTLTETPSSIHAIPQNQSVFSRELNFSEYGFDPKSGNNQNHHSLKPESGEILSFGESRRTSYGGVNGNTNTNTNSNSHFFSGQSPFVAAVDENKKNNMSNNGKKRSPNSRGSNDDGMLSFTSGVIIPATNLKSGGGGDSDHSDLEASVVKDPVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDVLHKQLEGVKKELEKTTDNVSSNHACNNNNNNKLSSNQPALIDLVEMDVKIIGWDAMITITCSKKNHPAATLMTALMELDLDVHYATVTLVNDLMIQQATVKMGSRFYTQEQLRAALSAKVGDVR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01898 658 Coils Coil 518 552 - -
Gma09g01898 658 MobiDBLite consensus disorder prediction 443 482 - -
Gma09g01898 658 Pfam Helix-loop-helix DNA-binding domain 476 521 IPR011598 GO:0046983
Gma09g01898 658 MobiDBLite consensus disorder prediction 394 428 - -
Gma09g01898 658 MobiDBLite consensus disorder prediction 357 382 - -
Gma09g01898 658 MobiDBLite consensus disorder prediction 394 482 - -
Gma09g01898 658 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 472 521 IPR011598 GO:0046983
Gma09g01898 658 PANTHER TRANSCRIPTION FACTOR MYC2 28 654 - -
Gma09g01898 658 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 475 541 IPR036638 GO:0046983
Gma09g01898 658 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 44 226 IPR025610 -
Gma09g01898 658 PANTHER MYC 28 654 IPR045084 GO:0003700|GO:0006355
Gma09g01898 658 Gene3D - 464 553 IPR036638 GO:0046983
Gma09g01898 658 CDD bHLH_AtAIB_like 469 545 - -
Gma09g01898 658 MobiDBLite consensus disorder prediction 359 382 - -
Gma09g01898 658 SMART finulus 478 527 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01898 Gma-Chr9 44589239 44591393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01898 1 655 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.001 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma09g01898 bHLH-MYC_N 4.7e-56 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01898 K13422 - gmx:100790168 1150.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01898 09 44589239 44591393 Gma09g01898 09 44589239 44591393 ECH
Gma01g00952 01 32730516 32732724 Gma09g01898 09 44589239 44591393 GST