Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01887 ATGTCGCCGCCGACGCTGGTAACGGAGGAGGAGGGGCGGAGCACCGTGGCGTCCGATTCTTCGCAATCCTTGGACTGTTTCTCTCAGAATGGTGCTGGATTGAAAGAACGGAATTACTTAGGGTTGTCTGATTGCTCATCAGTGGATAGCTGTGCCTCTACTGTGCCAAGCTTGTGTGATGAGAAAAAGGAGAACATGAATTTGAAGGCTACAGAGTTGAGGCTTGGTCTTCCCGGATTCCAATCGCCTGAAAGGGAACCGGATCTTTTCTCTTTAAGCTCACCAAAGCTTGATGAGAAGCCACTCTTCCCTTTGCTTCCTACTAAAGACGGGATTTGCTCGTCGGGGCAGAAAGCTGTTGTTTCTGGCAACAAAAGAGGTTTTGCTGATACCATGGATGGGTTTTCTCAGGGGAAGTTTGCTGGTAATACAGGGATGAACGCGGTGCTATCACCTAGACCTTCTGGAGCTCAACCTTCTGCTATGAAAGAAACACCAAGCAAATTGTCAGAACGTCCTTGCTCAACTAATAATGGAACCGGTCATAACCATACAGGTGCTTCTATCAGTGGCAGCGCACCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCAATGGCTACCACCACTAACAAGAACAATGATGAAGTCGATGGAAAACCAGGTGTTGGCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATCTTAGGAAGGTAGATCTAAGAAGTTATACAACATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCCTAAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAGGGATCTTCTGCATGGTTCTGAGTATGTTCTCACTTATGAAGATAAAGATGGAGATTGGATGCTTGTAGGGGATGTGCCATGGGAAATGTTCATTGAGACTTGCAAAAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGTTTAGCTCCCAGGGCCATGGAAAAGTCTAAAAGCAGGATTTAG 1065 0.4667 MSPPTLVTEEEGRSTVASDSSQSLDCFSQNGAGLKERNYLGLSDCSSVDSCASTVPSLCDEKKENMNLKATELRLGLPGFQSPEREPDLFSLSSPKLDEKPLFPLLPTKDGICSSGQKAVVSGNKRGFADTMDGFSQGKFAGNTGMNAVLSPRPSGAQPSAMKETPSKLSERPCSTNNGTGHNHTGASISGSAPASKAQVVGWPPIRSFRKNSMATTTNKNNDEVDGKPGVGALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFLSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLKIMKGSDAIGLAPRAMEKSKSRI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01887 354 MobiDBLite consensus disorder prediction 210 224 - -
Gma09g01887 354 MobiDBLite consensus disorder prediction 151 196 - -
Gma09g01887 354 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 20 347 IPR003311 GO:0005634|GO:0006355
Gma09g01887 354 SUPERFAMILY CAD & PB1 domains 232 335 - -
Gma09g01887 354 MobiDBLite consensus disorder prediction 208 227 - -
Gma09g01887 354 Gene3D - 229 347 - -
Gma09g01887 354 Pfam AUX/IAA family 71 345 IPR033389 -
Gma09g01887 354 PANTHER AUXIN-INDUCED PROTEIN 20 347 - -
Gma09g01887 354 MobiDBLite consensus disorder prediction 151 195 - -
Gma09g01887 354 ProSiteProfiles PB1 domain profile. 233 338 IPR000270 GO:0005515
Gma09g01887 354 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01887 Gma-Chr9 44467750 44470855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01887 237 344 B3 DNA Binding Superfamily AT4G23980 29.630 2.22e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gma09g01887 AUX_IAA 1.6e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01887 K14484 - gmx:100785203 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00968 01 33996153 34002148 Gma09g01887 09 44467750 44470855 GST