Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01884 ATGGAGCTTTCTCAACTTGGTTTTCTGGATGAGCTACTTGCTCCAAGAAAAGACACTAGTTGGAGTAGTGCTTTGTCCACTGGGTTGAATGAGTTACTACTCCCTAGTGGTTGGAGCTTTGACTCTTTTGATGAGAACCAAGGTTTATCCACTTTGAATCCCTCATTTGCTGCATTTTCAACTCCACTAGACCACAGATTTGAATGCCCTTATGGAAGTGAAGCAGCATACCCTTTTGTTGATGGCTTCACATTGCCTGAGCTTGATTCTTCATACACCAGGAATGATGAGTCAGCACCCCTTTTGCCACAAGAGGATAACCCATCATTGGAGGATGAAGAGTTTGGCTTTCTAGGAAGTGAAAGCCAGAGCTTGGAACAAGCAAAAATTGGCTGCAAAATTGAGGAACTGACAGAGATTCCAGTCTTTAACATGGGCTTGTGTGGGGAGAAAAAGCCCAAATCAAAGAAACTAGAAGGGCAGCCATCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGTTTGAATGACAGGCTTTCCATGCTAAGGTCAATAGTCCCTAAGATTAGCAAGATGGACAGGACCTCCATTCTTGGAGACACCATTGATTACATGAAAGAGCTTCTAGAAAGGATAGGCAAGTTGCAAGAAGAAGAAATGGAGGAGGGAACAAATCGGATAAACCTCTTGGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGAAGAGACCAGGACACAAGGATTAGCATCTGCTGTGCCACAAAGCCAGGATTACTACTGTCCACAGTGAACACCTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCACAGAGGTAGCAGAGCAGAGAAATTGTATGAGCCAGGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGTAGATGTCTCTAG 1002 0.4311 MELSQLGFLDELLAPRKDTSWSSALSTGLNELLLPSGWSFDSFDENQGLSTLNPSFAAFSTPLDHRFECPYGSEAAYPFVDGFTLPELDSSYTRNDESAPLLPQEDNPSLEDEEFGFLGSESQSLEQAKIGCKIEELTEIPVFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEEMEEGTNRINLLGISKELKPNEVMVRNSPKFDVERRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSMQASCTEVAEQRNCMSQEEIKQALFRNAGYGGRCL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01884 333 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
Gma09g01884 333 PANTHER - 2 333 - -
Gma09g01884 333 SMART finulus 166 215 IPR011598 GO:0046983
Gma09g01884 333 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 333 - -
Gma09g01884 333 Gene3D - 149 210 IPR036638 GO:0046983
Gma09g01884 333 CDD ACT_UUR-ACR-like 259 300 - -
Gma09g01884 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Gma09g01884 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 221 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01884 Gma-Chr9 44438744 44440166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01884 151 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 70.492 3.00e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma09g01884 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01884 - - gmx:100784145 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00181 01 1981315 1983160 Gma09g01884 09 44438744 44440166 GST