Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01867 ATGAAGGTGGAAAGTGTTTCAATATTCCAGTGGTGGTTTAGAGTGGCTGTGCAGCTCAGCTTAATCTTGCTCGGTGCCTGTTATAGAAGCGTTTCGACGTCTCCTCCCCCAGTCAAGCTGAATACCGAAAATCCTCACCAGGTGGTGATTGACAACGGCATCATTTCTCTCAATTTGTCAAATCCCGAGGGCGATATCATTGGAATATATAATGGAATTAAAAATGTACTTGAGGCAAAAAATAAAGAAGACGATAGAGGGTACTTGGACGTTGTTTGGAATGAACCAGGAAAACATGGCATGTTTCAGAGAATCCGTGGGACAGATTTCTCAGTCATTGCAGCAAACGAGAATATAGTGGAGATTTCATTTTTAAGAACATGGACAGCTTCCATGAAAGGCTCAAGTGTCCCCATGAACATAGACAAAAGGTATATATTGCGAAGAGGTGATTATGGGTTTTATTCATACGCAATATTTAATCGACCTTCAGGATTACCTGCAGTGGAGATTGATCAAATTAGGATTGTTTTCAAACTCGACGAAACCAGGTTCCACTACATGGCCATATCCGATACTAGGCAAAGGAACATGCCATCTGTGAGAGATAGAGCATCGGGTCAACCCCTGGCGTATCCTGAAGCTGTTCTCTTAACCAATTCATCTGAGCAACAATTTAAGGGAGAGGTGGATGACAAATACCAATACTCGAGTGAGAACAAAGATAACACTGTTCATGGGTGGATTACCCAGGATGGTTTAGCACCCGTGGGCTTCTGGTTGATAACACCCAGTAATGAGTTCCGCCACGCTGGGCCCGTTAAGCAAGACCTCACCTCTCATGTTGGCCCAACTACTCTTTCCATGTTTGTGAGTACTCATTATGCTGGCAAGGAGGTAACCATGGCATTTGGTGAAGGGGAGACATATAAAAAGGTTTTTGGTCCAGTTTTTGTCTACCTTAACTCTGTTCCAAACAAATCCCAGTTTCGGTCTCTCTGGTCAGATGCTGTAGAGCAGTTATCCAATGAAGTCAGAAGATGGCCTTATGATTTCGTTGGATCAAAAGATTTCCTTCCACCCAATCAACGGGGAACAGTGACAGGACGACTACTAGTCCAAGATGGGGGAAAGAGAGATCAACCTGCTAACAATGCTTATGTTGGTTTAGCTTTGCCTGGAGATACAGGATCATGGCAAAAAGAAAGCAAGGGTTACCAATTCTGGATTCAAGCTGACAAAGCTGGACACTTCTTGATTAAAAATATTGTACCCGGGGATTACAACTTGTATGCATGGGTTCCTGGTTTTATTGGAGATTATAGATATAAAACTAAAATTACCATCGAGCGGGGGGGCAATATCAACTTGAATTCACTTGTTTATAATCCTCCAAGAAATGGTCCTACTCTATGGGAAATTGGGATCCCTGATCGCTCAGCTGCGGAATTCTATATGCCAGACCCTAACCCCAAGTTGGTGAACAGATTATTCCAGAACGATAAGCAAGACAAGTTTAGGCAATACGGCTTGTGGGAACGTTACACTGAGTTATATCCAAACCATGATCTCGTTTACACTGTTGGTGTATCTGACTATCACAATGATTGGTTTTATGCTCAAGTCACCAGGAGCACACCAGAAAAATCATACATGCCAACCACATGGCAAATTCAATTCCAACTTAAAAATATCATAATGCCAGGAAATTACACATTCCAAGTGGCCTTGGCATCTACCACTAATGCTAGATTGGAGGTTAGGTTCAATGACCTGAATGCAAAGCTTCCCCACTTCTCAACAGGGCTAAAAGGCGATGACAATGCCATAGCAAGACATGGAATTCATGGATTGTATAGGTTGCATACTATAGCTGTAGGTAGCAATCATTTGGTGAATGGAAAGAACACCATCTATTTGACACAGTCAAAAGGCATAAGTCCTTTCATGGGAGTTATGTATGACTATGTCCGCTTAGAAAGTCCTCCAATTAAAAGTACTTGA 2004 0.4232 MKVESVSIFQWWFRVAVQLSLILLGACYRSVSTSPPPVKLNTENPHQVVIDNGIISLNLSNPEGDIIGIYNGIKNVLEAKNKEDDRGYLDVVWNEPGKHGMFQRIRGTDFSVIAANENIVEISFLRTWTASMKGSSVPMNIDKRYILRRGDYGFYSYAIFNRPSGLPAVEIDQIRIVFKLDETRFHYMAISDTRQRNMPSVRDRASGQPLAYPEAVLLTNSSEQQFKGEVDDKYQYSSENKDNTVHGWITQDGLAPVGFWLITPSNEFRHAGPVKQDLTSHVGPTTLSMFVSTHYAGKEVTMAFGEGETYKKVFGPVFVYLNSVPNKSQFRSLWSDAVEQLSNEVRRWPYDFVGSKDFLPPNQRGTVTGRLLVQDGGKRDQPANNAYVGLALPGDTGSWQKESKGYQFWIQADKAGHFLIKNIVPGDYNLYAWVPGFIGDYRYKTKITIERGGNINLNSLVYNPPRNGPTLWEIGIPDRSAAEFYMPDPNPKLVNRLFQNDKQDKFRQYGLWERYTELYPNHDLVYTVGVSDYHNDWFYAQVTRSTPEKSYMPTTWQIQFQLKNIIMPGNYTFQVALASTTNARLEVRFNDLNAKLPHFSTGLKGDDNAIARHGIHGLYRLHTIAVGSNHLVNGKNTIYLTQSKGISPFMGVMYDYVRLESPPIKST 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01867 667 Pfam Rhamnogalacturonate lyase family 36 230 IPR010325 -
Gma09g01867 667 Gene3D - 41 335 IPR014718 GO:0030246
Gma09g01867 667 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 43 663 - -
Gma09g01867 667 CDD RGL4_N 47 329 - -
Gma09g01867 667 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 43 663 - -
Gma09g01867 667 SUPERFAMILY Galactose-binding domain-like 467 660 IPR008979 -
Gma09g01867 667 Pfam Polysaccharide lyase family 4, domain II 384 456 IPR029413 -
Gma09g01867 667 SUPERFAMILY Galactose mutarotase-like 43 325 IPR011013 GO:0003824|GO:0005975|GO:0030246
Gma09g01867 667 Gene3D - 468 660 - -
Gma09g01867 667 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Gma09g01867 667 CDD RGL4_C 472 660 - -
Gma09g01867 667 Pfam Polysaccharide lyase family 4, domain III 470 659 IPR029411 -
Gma09g01867 667 CDD RGL4_M 363 460 IPR029413 -
Gma09g01867 667 Gene3D - 359 459 - -
Gma09g01867 667 SUPERFAMILY Starch-binding domain-like 359 459 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01867 Gma-Chr9 44275378 44282649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01867 38 662 Polysaccharide Lyase AT1G09890 56.646 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01867 K18195 - gmx:100801633 1380.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00192 01 2131413 2138849 Gma09g01867 09 44275378 44282649 GST