LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma09g01809	ATGATCACTGATGTGCCCCCATCTATGTCTCAAAACGGTAGGTCAAGCAGATATTCCTTTGGCTCTAGCAATGGCAATGGTGATACCCCTGCACAAAATGGTGCTGCTGTTATCAATGTTGATGACTATGATAGTGATAGCTCCAATTTTGCACCACCCACGCCATCAACTATGTCAATGGCTGTTCCAGCAGAACTTGCTGGAGCTGTACCCTTGATCAACAGATTCCAGGTGGATGGATTTTTAAAATTAATGCAGAAACAAATTCAATCTGCTGGGAAACGTGGATTTTTTTCTAAAAGATCTGTAGGGCCCCAAGTTCGAGAAAAAATTACATTTGAGGACATGTTGAGTTTTCAAAAGGATCCAATTCCAACATCACTGCTCAAGTTAAATGTTGATTTAGTAAGTCGGGCAACAAAATTATTCCAAATAATTTTGAAATATATGGGAATTGATCCATCAGATCGTGTAACTCCAATAAGCTTAGATGAACGAGTTGAGCTTGTAGGGAAACTGTACAAGCAAAGTTTGAAACGACCAGAACTCCGAGATGAACTTTTTGTTCAGATATCAAAGCAAACAAGAAATAACCCCGAGAGGCAATACTTGATTAAAGCATGGGAGCTCATGTATTTGTGTGCATCCTCAATGTCTCCTAGTAAAGACATTAGCAGTTATCTATCAGAATACATTCATAACATAGCAAATGGTGTGGGTACTGATTCTGAGATCCAAGTCCTTGCATTAAATACATTAAATGCTCTAAAGCATTCTGTCAAGGCTGGTCCCAGACATATAATTCCTGGGCGTGAGGAGATTGAAGCTCTGTTGACAGGGAGAAAGCTTACAACTATAGTGTTCTTCCTAGATGAAACATTTGAAGAAATTACATATGACATGTCAACCACAGTTGCCGATGCTGTTGAGGAACTTGCAGGGCTCATTAAACTGTCATCATATTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATCTTGGGAATGAGGAGTACATTGGGTTAGATGAAAACAAATATATTGGGGATCTCCTGGTGGAGTTCAAAGCTGCAAAGGATCGAAGTAAAGGAGAAATCTTGCACTGTAAACTGATATTCAAGAAAAAGTTATTTCGCGAGTCAGATGAAGCTGTGACAGAGCCTATGTTTGTGCAATTGTCTTATGTACAAATGCAACATGATTATATTTTGGGAAATTACCCTATTGGAAGGGATGATGCTGCTCAGCTCTCTGCATTACAAATTTTGGCTGAGATTGGATTTCTCAACACACCAGAATCATGCACTGACTGGAATTCACTTCTGGAGTGTTTCCTGCCTAGACAAATTTCAATGACACGAGCAAAACGCGAATGGGAGTATGACATTCTTTCTCGTTATCGTTCATTGGAGAATCTGACAAAAGATGATGCGCGGCAACAATTTCTGCGTATATTGAGAGCACTTCCTTATGGAAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGATCCTATTGGACTTTTACCTGGTCGGATAATTTTGGGAATTAATAAAAGAGGGATTCATTTTTTCCGTCCAGTTCCTAAGGAATATTTGCACTCAGCTGAGTTGAGAGACATAATGCAATTTGGAAGCAGTAATACTGCAGTCTTCTTTAAAATGCGAGTTGCAGGTGTTCTCCACATATTCCAGTTTGAAACCAAGCAGGGAGAAGAAATTTGTGTAGCTCTTCAGACACATATAAATGATGTAATGCTGCGCCGTTATTCGAAAGCACGATCAGCTGCTGCTGGTGGTGGTTCTCTGAACGGAGACATTTCTAGTAATTCTAAACCTCCTAATATGGAATTATACGAGAAGCGTGTTCAAGAATTATCAAAACTTATTGAAGAATCTCAAAAAAATGCTGATCAActgcttgaagaattacgtgtgaagcaaaaacaagaagagaaaatgcaagaagaattggatgatttgaaagaatccttaaaagctgataagcaaaatctggatgcagttacaagtgaccgtaatagacttttatcattatgcaatgaaaaagataaggaactacagGCTGCTATTCTAGACAAAAGGAATATGGAATCTAGGATGTCCAAGTTAAATAATGCGGTGATAGAGAACACTGCCAAAAAGGATCTTGCTAATGCTGGAAATAGACAAGTGACTCAAAAGCTTGAAGATGAGCTAAAAGTTTGCAAATATGAGCTGCTATCAGCCAATGAAACTATCAAAAGCTTGAAAAGTGAAAAATTGGTTTTGGAACAGAAGTTATCTGCACTTCAAACGAGGAATGCTGGAGAGATTAGTTCCCTTCAATGGAAACTTGAGCAAGAACGCAAAGTTGTGAAGTCTGAAGCATATGAGCTTGAAAGAAAGATAGAAGGTTGTAGGCAAGAATTATTGGTTGCTAAGGCTACCATTTCAATGAAGGACTCTGAGTTGGCTGCATTGCAGAATAATTTGAAGGAATTGGAAGAATTGAGAGAAATGAAAGAGGATATCGACAGAAAGAATGAACAAACAGCTGCCATACTGAAAATGCAAGGGGCTCAATTAGCTGAAATGGAAACACTTTATAAGGAAGAACAGGTTTTAAGGAAGCGCTATTTTAATGTAATAGAAGACATGAAGGGCAAGATCAGAGTTTACTGTCGACTAAGACCTCTTAGTGAAAAAGAGATTGCTGAGAAAGAAAGAGAAGTTCTTACTGCCACTGATGAGTTTACAGTTGAATACCCATGGAAAGATGATAAACTGAAGCAGTACATATATGACCGAGTTTTTGATGCCGATGCAACTCAAGAAAGCGTATTTGAGGATACAAAGGCAAGTCATTTATCATATTTATTTCTTGTTTATGGGAACATATATAACTTACACTCATTATCAATTTCTCGTGGATTTGCAATGCAGTATTTGGTGCAGTCTGCTGTAGATGGTTATAATGTTTGCATATTTGCCTATGGTCAAACTGGCTCTGGAAAGACATTTACAATCTATGGATCTGACAACAACCCTGGACTTACCCCTCGTGCAATTGCAGAACTTTTTAGAATTTTAAGAAGAGATAATAACAAGTATTCTTTTTCCTTAAAGGCATACATGGTGGAGTTGTATCAGGATACCCTTATAGATCTGTTACCAAAGAATGGAAAGCATTTAAAATTGGATATCAAGAAGGATTCAACGGGAATGGTAGTTGTGGAAAATGTGACAGTTATGTCTATTTCTACAATTGAAGAATTGAATAGTATAATACAAAGAGGATCTGAACGACGACATATATCTGGAACCCAAATGAACGATGAAAGTTCAAGATCTCATCTCATTCTATCGATTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAGGGGAAAGCTGAGTTTTGTGGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTACCGGGAGTCAGCTTAAGGAAGCTCAAAGCATTAACAAGTCATTATCAGCACTTGGAGATGTTATTAGTTCTTTGTCTTCTGGTGGTCAACACACACCATACAGGAATCACAAGTTAACCATGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTGAATGTTTCTCCGGCAGAATCAAATTTGGACGAGACAAATAACTCTCTTATGTACGCCTCACGAGTGAGATCCATTGTGAATGACCCCAGCAAAAATGTTTCCTCAAAAGAGGTAGCACGACTGAAGAAGTTGGTTGCATATTGGAAACAACAAGCTGGTAGAGGACTTGAGTATGATGATTTAGAAGAAATTCAAGATGAAAGACCAACTAAGGAGAATGGTAATGGCAATAGGTAA	3897	0.3685	MITDVPPSMSQNGRSSRYSFGSSNGNGDTPAQNGAAVINVDDYDSDSSNFAPPTPSTMSMAVPAELAGAVPLINRFQVDGFLKLMQKQIQSAGKRGFFSKRSVGPQVREKITFEDMLSFQKDPIPTSLLKLNVDLVSRATKLFQIILKYMGIDPSDRVTPISLDERVELVGKLYKQSLKRPELRDELFVQISKQTRNNPERQYLIKAWELMYLCASSMSPSKDISSYLSEYIHNIANGVGTDSEIQVLALNTLNALKHSVKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEITYDMSTTVADAVEELAGLIKLSSYSSFSLFECRKVVTGSKAPDLGNEEYIGLDENKYIGDLLVEFKAAKDRSKGEILHCKLIFKKKLFRESDEAVTEPMFVQLSYVQMQHDYILGNYPIGRDDAAQLSALQILAEIGFLNTPESCTDWNSLLECFLPRQISMTRAKREWEYDILSRYRSLENLTKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGLLPGRIILGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSAAAGGGSLNGDISSNSKPPNMELYEKRVQELSKLIEESQKNADQLLEELRVKQKQEEKMQEELDDLKESLKADKQNLDAVTSDRNRLLSLCNEKDKELQAAILDKRNMESRMSKLNNAVIENTAKKDLANAGNRQVTQKLEDELKVCKYELLSANETIKSLKSEKLVLEQKLSALQTRNAGEISSLQWKLEQERKVVKSEAYELERKIEGCRQELLVAKATISMKDSELAALQNNLKELEELREMKEDIDRKNEQTAAILKMQGAQLAEMETLYKEEQVLRKRYFNVIEDMKGKIRVYCRLRPLSEKEIAEKEREVLTATDEFTVEYPWKDDKLKQYIYDRVFDADATQESVFEDTKASHLSYLFLVYGNIYNLHSLSISRGFAMQYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSDNNPGLTPRAIAELFRILRRDNNKYSFSLKAYMVELYQDTLIDLLPKNGKHLKLDIKKDSTGMVVVENVTVMSISTIEELNSIIQRGSERRHISGTQMNDESSRSHLILSIVIESTNLQSQSVARGKLSFVDLAGSERVKKSGSTGSQLKEAQSINKSLSALGDVISSLSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETNNSLMYASRVRSIVNDPSKNVSSKEVARLKKLVAYWKQQAGRGLEYDDLEEIQDERPTKENGNGNR	1298

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma09g01809	1298	SUPERFAMILY	Second domain of FERM	381	498	IPR035963	-
Gma09g01809	1298	SMART	MyTH4_1	119	278	IPR000857	GO:0005856
Gma09g01809	1298	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	896	1271	IPR027417	-
Gma09g01809	1298	Coils	Coil	824	861	-	-
Gma09g01809	1298	ProSiteProfiles	FERM domain profile.	283	597	IPR000299	GO:0005856
Gma09g01809	1298	PANTHER	KINESIN-RELATED	989	1298	IPR027640	GO:0003777\|GO:0007018
Gma09g01809	1298	PANTHER	KINESIN-RELATED	618	959	IPR027640	GO:0003777\|GO:0007018
Gma09g01809	1298	SUPERFAMILY	PH domain-like	503	591	-	-
Gma09g01809	1298	Gene3D	MyTH4 domain	98	280	IPR038185	-
Gma09g01809	1298	PRINTS	Kinesin heavy chain signature	997	1018	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Gma09g01809	1298	PRINTS	Kinesin heavy chain signature	1115	1132	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Gma09g01809	1298	PRINTS	Kinesin heavy chain signature	1146	1164	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Gma09g01809	1298	PRINTS	Kinesin heavy chain signature	1195	1216	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Gma09g01809	1298	Gene3D	-	1248	1295	-	-
Gma09g01809	1298	MobiDBLite	consensus disorder prediction	1	33	-	-
Gma09g01809	1298	Coils	Coil	700	720	-	-
Gma09g01809	1298	SMART	B41_5	279	503	IPR019749	-
Gma09g01809	1298	Pfam	Kinesin motor domain	987	1245	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Gma09g01809	1298	Pfam	FERM central domain	389	503	IPR019748	-
Gma09g01809	1298	SMART	kinesin_4	894	1253	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Gma09g01809	1298	SUPERFAMILY	Prismane protein-like	839	900	IPR011254	GO:0003824\|GO:0016491
Gma09g01809	1298	MobiDBLite	consensus disorder prediction	1278	1298	-	-
Gma09g01809	1298	Gene3D	-	501	609	IPR011993	-
Gma09g01809	1298	Gene3D	Kinesin motor domain	838	1246	IPR036961	-
Gma09g01809	1298	CDD	FERM_C_KCBP	500	607	-	-
Gma09g01809	1298	CDD	KISc_C_terminal	894	1247	-	-
Gma09g01809	1298	PANTHER	KINESIN-LIKE CALMODULIN-BINDING PROTEIN	989	1298	-	-
Gma09g01809	1298	PANTHER	KINESIN-LIKE CALMODULIN-BINDING PROTEIN	618	959	-	-
Gma09g01809	1298	Coils	Coil	753	780	-	-
Gma09g01809	1298	CDD	FERM_B-lobe	398	496	IPR019748	-
Gma09g01809	1298	ProSitePatterns	Kinesin motor domain signature.	1145	1156	IPR019821	GO:0003777\|GO:0005524\|GO:0007018
Gma09g01809	1298	Pfam	MyTH4 domain	172	276	IPR000857	GO:0005856
Gma09g01809	1298	Pfam	Microtubule binding	877	962	IPR031852	GO:0008017
Gma09g01809	1298	Gene3D	-	282	386	-	-
Gma09g01809	1298	ProSiteProfiles	MyTH4 domain profile.	119	278	IPR000857	GO:0005856
Gma09g01809	1298	Coils	Coil	623	685	-	-
Gma09g01809	1298	Gene3D	-	395	496	IPR014352	-
Gma09g01809	1298	ProSiteProfiles	Kinesin motor domain profile.	896	1245	IPR001752	GO:0003777\|GO:0005524\|GO:0007018\|GO:0008017
Gma09g01809	1298	MobiDBLite	consensus disorder prediction	1	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma09g01809	Gma-Chr9	43681590	43690949	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma09g01809	51	1295	Calmodulin-binding Proteins	AT5G65930	71.532	0.0	1797

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma09g01809	-		-	gmx:100807481	2392.85