Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01800 ATGAATCAACTTGGTGGTGTTAGCGTTATCCTTCTGGTTCTCTCAGTCTTGTGTTTCCATGTTAGAGCACAGACTTCTGCACCTTCTTCAGGAGATGCTGTCTCCAATTTCCAGCCAAGCCTTGCTGTTGTCATAGGAATCCTTGGTGTCATGTTCTTACTGACATTCTTTCTTCTCATGTATGCAAAATTCTGTCATCGCCGCCATGGCGGCGCTTCGGCCGTTGGAGACTCAGAAAATCAACTTACTTTTGTGAGATCAAGGTCTAGATTCTCAGGAATTGACAAGACTGTCATAGAATCACTCCCCTTCTTCAGATTCTCTGCACTCAAAGGGTTAAAGGAAGGGCTGGAGTGTGCAGTGTGCTTATCAAAGTTTGAAGATGTTGAAATTCTGAGACTTGTACCAAAGTGCAAGCATGCTTTTCATATTGATTGCATAGACCACTGGCTTGAAAAGCACTCTACCTGTCCTATTTGCAGGCACAGAGTCAACCCTGAGGACCACACAACCTTCACATATTCAAACAGTTTAAGGATGTTAGCAGGTGAGGAATCTAACATAGAGATCTTGGTTCAGAGAGAAGAGGAAGAGCATCATGGTTCATCAAGATTCAGTGTAATTGGAAGCAGCAGCTTTCGGAAAACGGTCAAGGAAGAAGAATTACTCATCCAAAAAGGAGCAGAAGATAGTGATGGTAACCAGAAAGGGTATCATAAACACAACCACAGGATTACTATATCTGATGTTGTGTTCAAGCACAGGTGGAGCAACGTGAGTTCTTCAGACCTTATGTTTCTGAATTCGGAGATGCTCAATGATACATCAAGCAACAGATTCAGCAGCAACCTGGAATCAATTACAAGAGGGGTAGTGGTGGAAAATGAGCAAATTATGAACATCAAGGAGGAGATGGAGAGGAAGATTTCCTTTGAGAACAAAGTTGTTGGTGCACTAAACAACATCGTTTCAGATCATAAGGAAGATCCTCCTTTTACATCAGATTCTGCACCAAAGTATGTGAACCCGGGTGAGAAAAGGTCAATGTCAGAAATCACTGCTGTTTCTAGATTTGGAGATTTAGGCATGAAAATGAGGGTCTTGAAGGATTCTGATTCCCTTCAAAACAACCTTAAAGAGGAAAGAATGAGGCAGATTTGGTTTCCAATTGCCAGAAGAACAGCTCAATGGTTTGTGAATAGAGAAGAAAGAAGGTCTCTGCAATCTCAGAATAATAAACAACAGCCATTAGATGTATAA 1260 0.4167 MNQLGGVSVILLVLSVLCFHVRAQTSAPSSGDAVSNFQPSLAVVIGILGVMFLLTFFLLMYAKFCHRRHGGASAVGDSENQLTFVRSRSRFSGIDKTVIESLPFFRFSALKGLKEGLECAVCLSKFEDVEILRLVPKCKHAFHIDCIDHWLEKHSTCPICRHRVNPEDHTTFTYSNSLRMLAGEESNIEILVQREEEEHHGSSRFSVIGSSSFRKTVKEEELLIQKGAEDSDGNQKGYHKHNHRITISDVVFKHRWSNVSSSDLMFLNSEMLNDTSSNRFSSNLESITRGVVVENEQIMNIKEEMERKISFENKVVGALNNIVSDHKEDPPFTSDSAPKYVNPGEKRSMSEITAVSRFGDLGMKMRVLKDSDSLQNNLKEERMRQIWFPIARRTAQWFVNREERRSLQSQNNKQQPLDV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01800 419 SUPERFAMILY RING/U-box 98 167 - -
Gma09g01800 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 413 - -
Gma09g01800 419 SMART ring_2 119 160 IPR001841 -
Gma09g01800 419 CDD RING-H2_PA-TM-RING 118 161 - -
Gma09g01800 419 Pfam Ring finger domain 118 161 IPR001841 -
Gma09g01800 419 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Gma09g01800 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 413 - -
Gma09g01800 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 170 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01800 Gma-Chr9 43590838 43592599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01800 9 419 C3H Transcription Factor Family AT4G28890 48.416 2.29e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01800 K10664 - gmx:100806950 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01800 09 43590838 43592599 Gma09g01800 09 43590838 43592599 ECH