Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01789 ATGTCTGTGTCATTGGAGCAAGAAGGCTATGTAGGCTTATCAGAGGTTCCTGCAATGGAAGGTTGTTCTGAGAGGACTGGTGGTGGCTTGAACCTCAAGGCTACTGAGCTGAGGCTTGGTTTGCCAGGTTCTGAGTCACCAGAGAGAGAAGAGGGTGTGGAGGACAAGAATGTGCACCCTTTAGGCATGGTGAAGTGTTTGGTGTCAGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTTCTGGGAAGTGGCTTCTTTCTGGGAATAGTGGATCTGAGGTGGGTTTGGGGAAAGATGGTGGCTTCTTCTCTCCAAGGGGTGTTGGTGTTAGTGTTAGTGCTGCCAAGGCTGAGTGTACCAACCAACAAACTTGTGTTGTAAAAGATAAAGTTCCTCAATCTCCAAAGCCGTTGAATGAGAAGAAGCCTCAGATATCTGTTCCTGCTGCAAAGGAACAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGAAAGAACTCAATGGCCACTCAGCCACAAAAGAATGATGATAATGCAGAAGCCAAGTCGGTATGCCTTTATGTGAAGGTCAGCATGGATGGTGCTCCATACTTGAGGAAAGTTGACCTCAAAAACTTTGGCACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGTTCCCATGGAGTTTGTGGTCGAGATAAGTTGACTGAAAATAGATTGATGGATCTCCTCCATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTTGTTGGTGATGTTCCATGGGAGATGTTCACCGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAATGCAAAAGTCGCAACTAG 924 0.4621 MSVSLEQEGYVGLSEVPAMEGCSERTGGGLNLKATELRLGLPGSESPEREEGVEDKNVHPLGMVKCLVSGAKRGFSDTIDGGSGKWLLSGNSGSEVGLGKDGGFFSPRGVGVSVSAAKAECTNQQTCVVKDKVPQSPKPLNEKKPQISVPAAKEQVVGWPPIRSFRKNSMATQPQKNDDNAEAKSVCLYVKVSMDGAPYLRKVDLKNFGTYMELSSALEKMFSCFTISQCGSHGVCGRDKLTENRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01789 307 Pfam AUX/IAA family 35 298 IPR033389 -
Gma09g01789 307 ProSiteProfiles PB1 domain profile. 187 289 IPR000270 GO:0005515
Gma09g01789 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 299 IPR003311 GO:0005634|GO:0006355
Gma09g01789 307 Gene3D - 181 300 - -
Gma09g01789 307 SUPERFAMILY CAD & PB1 domains 185 288 - -
Gma09g01789 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 13 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01789 Gma-Chr9 43502168 43505476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01789 190 297 B3 DNA Binding Superfamily AT4G23980 30.556 1.74e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma09g01789 AUX_IAA 4.2e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01789 K14484 - gmx:100803754 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01789 09 43502168 43505476 Gma09g01789 09 43502168 43505476 ECH
Gma05g02228 05 43334679 43337147 Gma09g01789 09 43502168 43505476 PCT
Gma08g00351 08 2931972 2934900 Gma09g01789 09 43502168 43505476 PCT
Gma09g01789 09 43502168 43505476 Gma05g02228 05 43334679 43337147 PCT
Gma09g01789 09 43502168 43505476 Gma08g00351 08 2931972 2934900 PCT