Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01785 ATGGATCCTCCACCCAAGACTTGGAGCATCCACATGCGCTCCGAGATAACCGCCAAGTACGAGGTTCTCAACCGGGTCGGGTCGGGCGCCTACGCCGACGTCTACCGCGCCATCCGCCTCTCCGACGGCGCCTCGGTGGCGCTGAAGGAGGTCCACGATTCCCAATCCGCATCGCGCGAAATCGAGGCCCTGAGGCTTCTGAAAGGGTCCCGAAACGTGGTCGTGCTGCACGAGTTCTTCTGGCGCGAGGACGAGGACGCGGTTCTTGTGCTCGAGTTTCTCGGAACCGACCTTGCGGCGGTGATCGGAGAAGGTGATGGTGTCGGTGTTGGAGAAATTAAGGGGTGGATGGTGCAGGCTCTGAGTGCAGTGGATGAGTGTCATAGGAACATGATCGTGCATAGGGATTTGAAGCCGTCGAATTTCTTGGTTTCTGATGATGGGGTCCTCAAGTTAGGGGATTTTGGACAGGCAAGGATACTAGTGGAGTCTGGATTTAATGCTCCCCAGGAGAACCCGCCACCATATGAAGATGATACTTCTAATGCTGAAAGCTCAACCCAACATTCTGAATCTATTTCTCAATTAGTTAACTTAAACCAAACTGCATATGAAAATCCAAATCTGGGAACCTTGAGTCATGAAGAATATTTCAGAGTCTTGGATGAGATGAAAACCAAGAGCTACTCGTATGACACTGATAAGGACACAAACATCTATGATGGAAACACCTCATGTCTTGCAACATGCACAACCAGCGACATAGATGATGATCTTTGTAAGGGTTCTTTTACATATGAAGCTGAGGAGGTAGGAGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACTCGGTGGTTCCAAGCCCCTGAACTACTCTATGGATCCACAGACTATGGTTTAGAGGTTGATCTTTGGTCATTGGGGTGTGTCTTTGCCGAGCTCTTAACATTGAAGCCATTGTTTCCTGGGACAAGTGATGTAGATCAGCTCAGCAGAATTGTAAGTGTTTTGGGGAACATTGATGAGGAAACTTGGCCTGGTTGTCACAAACTTCCTGATTATGGATCAATCTCATTTGGTGAGGTGGAAAATCCTAGTGGTCTTGAAGCATGCATGCCAAATTGCACCCCTGATGAAGTTTCCCTAGTCAAAAGACTGATTTTTTATGATCCTGCTAAGAGGGCCACAGCAATGGAGTTACTTCAGGACAAGTACTTTAGTGAAGAACCTCTTCCTGTTCCAATTTCTGAATACAATGAAGTGGATTCTGATTCTGCTTTGGAGGAGTTTGGCACCTTGAATATCACCACAACTGGTTCTGATTTATCTATACAGATCCCTTGA 1350 0.4756 MDPPPKTWSIHMRSEITAKYEVLNRVGSGAYADVYRAIRLSDGASVALKEVHDSQSASREIEALRLLKGSRNVVVLHEFFWREDEDAVLVLEFLGTDLAAVIGEGDGVGVGEIKGWMVQALSAVDECHRNMIVHRDLKPSNFLVSDDGVLKLGDFGQARILVESGFNAPQENPPPYEDDTSNAESSTQHSESISQLVNLNQTAYENPNLGTLSHEEYFRVLDEMKTKSYSYDTDKDTNIYDGNTSCLATCTTSDIDDDLCKGSFTYEAEEVGGNELGCLTSCVGTRWFQAPELLYGSTDYGLEVDLWSLGCVFAELLTLKPLFPGTSDVDQLSRIVSVLGNIDEETWPGCHKLPDYGSISFGEVENPSGLEACMPNCTPDEVSLVKRLIFYDPAKRATAMELLQDKYFSEEPLPVPISEYNEVDSDSALEEFGTLNITTTGSDLSIQIP 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01785 449 MobiDBLite consensus disorder prediction 174 192 - -
Gma09g01785 449 SUPERFAMILY Protein kinase-like (PK-like) 4 418 IPR011009 -
Gma09g01785 449 PANTHER CYCLIN-DEPENDENT KINASE 10 14 416 - -
Gma09g01785 449 PANTHER CELL DIVISION PROTEIN KINASE 14 416 - -
Gma09g01785 449 SMART serkin_6 20 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma09g01785 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gma09g01785 449 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gma09g01785 449 MobiDBLite consensus disorder prediction 166 192 - -
Gma09g01785 449 Pfam Protein kinase domain 279 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma09g01785 449 Pfam Protein kinase domain 20 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma09g01785 449 Gene3D Transferase(Phosphotransferase) domain 1 106 414 - -
Gma09g01785 449 Gene3D Phosphorylase Kinase; domain 1 11 105 - -
Gma09g01785 449 ProSiteProfiles Protein kinase domain profile. 20 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01785 Gma-Chr9 43463425 43465315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01785 1 449 Core Cell Cycle Gene Families AT4G28980 57.917 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Gma09g01785 Pkinase 1.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01785 - - gmx:100802698 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01785 09 43463425 43465315 Gma09g01785 09 43463425 43465315 ECH
Gma07g00761 07 8054681 8058012 Gma09g01785 09 43463425 43465315 GST
Gma05g02234 05 43420349 43422876 Gma09g01785 09 43463425 43465315 PCT
Gma08g00358 08 3012756 3014553 Gma09g01785 09 43463425 43465315 PCT
Gma09g01785 09 43463425 43465315 Gma05g02234 05 43420349 43422876 PCT
Gma09g01785 09 43463425 43465315 Gma08g00358 08 3012756 3014553 PCT