Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01709 ATGACCAACGAAATGAAAGAAGCAAGTGCCTTAGGAGCTAGAACAGCACGAGCATGCGAGAGCTGCCTAAAAGTAAGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCAGCAAACCAATTAGCAAGCAGACACGAAAGGGTGAAGCTTCAAACTGCATCCTCCAAGGTCAACTACTCAGTGACCCCTAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCTCGCAGCAACAACAAGCACTCATCGCTGCAACAACAACAACAAAAACCATTACATGAAGAACAAGGAGAAGAAGAAGAAGTGTTTTTCAATAACACCATCATTAGTGTTCAACCCCTTGTGCCTGAGCTTGGAAGTGAAGAGCCATTGCTTAATGATGAGACCGAGGAGCAACTCCTGTGTCGCGTGCCCGTATTTGATGCTGAGCTTTGTAGCATATACAATGAAGTGAAGGACGAGGTTAATGTAGCTGGTGGTGAAGTAGCCTTTGACTTGGAAAACTTTTCTTCTGAGTTTCTACCAACAGATATGGATCTTGCTGAGTTTTCTGCTGATGTGGAAAGCTTACTTGGAAACGGGGTTGATGAGGATTCACCTGTGAAGAAAGGATCAGAACTAGTGCTTCTTGATTGCAAAGAAGAAGGAGATGATGAAATGGATGCATGTGTTAATGGAATTGGAGCCAACAAAGATGCAATGGTTAAGGTCAAAGATGAAGAAGAACTTGATGCTGATGATGACACAGCTTGCCATTTGGATTCGATTCTTGACATGAATAGCGAGGCCTTTAATTGGAATATTGCTGAGTCAGAGTCACCTGCACAGGCACAAGAAGATGAAGTGAGTAAAGTGGGAACCAATAAGAAGGACATATTTTTGAGGCTAAACTATGAAGAAGTCATTACTGCTTGggcaagtcaaggttctccatggactacaggaaCCCCACCTAAGTTCTTCAACTCCGATGATTGCTGGCTAGACTTGTTTTCTTATAGTAtcatagccgatctcatatatatctggctaaaggaggaaggttgtgttgcgtcttcagtaaccgatgtaaaattcgtcgaTATACCTGAAATCATTCGTAGGGCGGAGATGTGTTATGCCTTCGGTAACCAATGCAAAGGTTCGAATGGTGGGGGTGTTCAATGCTATTATGGGGAAGTGAGAAGCTTAAGAGTGCATGCAGATGGGGGAAGAGAAGCAAGAGTGTCAAGGTACCGAGAGAAGAGAAGAACGCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTAAACGCGGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGTGTTCCTTTGTTGGAGCCACTGCTTTGCCAGCTTAATTATCAATCATCACCACTGACATGA 1443 0.4033 MTNEMKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLASRHERVKLQTASSKVNYSVTPKVAWHSGFTRKARTPRSNNKHSSLQQQQQKPLHEEQGEEEEVFFNNTIISVQPLVPELGSEEPLLNDETEEQLLCRVPVFDAELCSIYNEVKDEVNVAGGEVAFDLENFSSEFLPTDMDLAEFSADVESLLGNGVDEDSPVKKGSELVLLDCKEEGDDEMDACVNGIGANKDAMVKVKDEEELDADDDTACHLDSILDMNSEAFNWNIAESESPAQAQEDEVSKVGTNKKDIFLRLNYEEVITAWASQGSPWTTGTPPKFFNSDDCWLDLFSYSIIADLIYIWLKEEGCVASSVTDVKFVDIPEIIRRAEMCYAFGNQCKGSNGGGVQCYYGEVRSLRVHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKSVPLLEPLLCQLNYQSSPLT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01709 480 Pfam B-box zinc finger 16 61 IPR000315 GO:0008270
Gma09g01709 480 ProSiteProfiles CCT domain profile. 419 461 IPR010402 GO:0005515
Gma09g01709 480 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Gma09g01709 480 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 466 - -
Gma09g01709 480 MobiDBLite consensus disorder prediction 81 111 - -
Gma09g01709 480 CDD Bbox1_BBX-like 18 59 - -
Gma09g01709 480 SMART bboxneu5 14 61 IPR000315 GO:0008270
Gma09g01709 480 Pfam CCT motif 419 461 IPR010402 GO:0005515
Gma09g01709 480 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01709 Gma-Chr9 42725927 42728367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01709 8 460 C2C2-CO-like Transcription Factor Family AT1G25440 39.789 1.13e-82 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma09g01709 zf-B_box 3.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01709 - - gmx:100802113 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00829 07 8833626 8844077 Gma09g01709 09 42725927 42728367 GST
Gma05g02270 05 43743008 43744891 Gma09g01709 09 42725927 42728367 PCT
Gma08g00395 08 3329419 3331437 Gma09g01709 09 42725927 42728367 PCT
Gma09g01709 09 42725927 42728367 Gma05g02270 05 43743008 43744891 PCT
Gma09g01709 09 42725927 42728367 Gma08g00395 08 3329419 3331437 PCT