Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01654 ATGGCAGAACTCGATCTGTCCAAGAAAGTAGCCGATAGGTATCTCAAGCGTGAAGTCCTTGGTGAGGGTACATACGGTGTCGTTTACAAAGCCATCGATACCCAGACAGGGCAGACGGTTGCAATTAAGAAGATCCGGCTTGGCAAGCAGAAAGAAGGGGTCAATTTTACGGCTCTCAGAGAAATTAAACTACTTAAAGAGCTCAAAGATCCAAACATTATTGAGTTGATTGATGCCTTTCCACATAAAGGGAATTTGCATCTTGTGTTTGAGTTCATGGAGACAGACCTCGAAGCTGTTATACGGGACAGGAATATTGTTCTTTCACCTGGTGATATAAAATCTTACCTTCAGATGACATTAAAGGGCCTTGCTATTTGCCACAAGAAATGGGTGTTGCATAGGGATATGAAGCCAAATAACTTGTTGATAGGATCCAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCACGGGTATTTGGAAGCCCGGATCGCAGGTTCACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTATTATTTGGCACCAAGCAGTATGGTCCTGGGGTAGATGTTTGGGCTGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTCCTGCAGGGTTCAAGTGATATTGATCAATTAGGAAAGATTTTCGCAGCATTTGGAACTCCATCTGCTTCTCAGTGGCCTGATATGATTTTCCTTCCTGATTATGTTGAATATCAACATGTTCCTGCCCCACCTTTGCGCTCTTTATTTCCTATGGCAAGTGATGATGCTTTAGATTTGTTGTCAAAGATGTTTACTTATGATCCGAAGGCTAGAATTTCTGTACAGCAAGCACTAGAGCACAGGTACTTCTCATCTGCACCTCTGCTCACAGATCCTGTTAAACTTCCAAGACCCGCTCCTAAGAAGGAATCTAAGGTTTCAGATGTAATTTCAAACGAAGGTCCTACTGTCTTGTCACCTCCAAGAAAGTCTAGGAGAGTAATGCCAGGGCGTGATGGGTCTGAAGGCAATTCTTTGCAAGGAGATAAGTTCGATGACAGTGTTGTTAGTGTCAGACAGGCAGCTGGTGATAATACGGGCAAGAATGAGCCAGCTCCAATGTCACTAGATTTTTCTCTTTTTGGATTAAAACCTCCAAATAGACCTATGATTACCAGTGCTGACAGATCACATTTAAAAAGAAAATTAGATCTAGAATTCTAG 1236 0.428 MAELDLSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIVLSPGDIKSYLQMTLKGLAICHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARVFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSASQWPDMIFLPDYVEYQHVPAPPLRSLFPMASDDALDLLSKMFTYDPKARISVQQALEHRYFSSAPLLTDPVKLPRPAPKKESKVSDVISNEGPTVLSPPRKSRRVMPGRDGSEGNSLQGDKFDDSVVSVRQAAGDNTGKNEPAPMSLDFSLFGLKPPNRPMITSADRSHLKRKLDLEF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01654 411 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Gma09g01654 411 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Gma09g01654 411 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma09g01654 411 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma09g01654 411 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma09g01654 411 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Gma09g01654 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gma09g01654 411 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Gma09g01654 411 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Gma09g01654 411 MobiDBLite consensus disorder prediction 392 411 - -
Gma09g01654 411 MobiDBLite consensus disorder prediction 304 357 - -
Gma09g01654 411 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Gma09g01654 411 SUPERFAMILY Protein kinase-like (PK-like) 9 299 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01654 Gma-Chr9 42077046 42082165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01654 8 411 Core Cell Cycle Gene Families AT1G73690 76.980 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Gma09g01654 Pkinase 6.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01654 K02202 - gmx:100814263 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01654 09 42077046 42082165 Gma09g01654 09 42077046 42082165 ECH
Gma07g00902 07 9815594 9820182 Gma09g01654 09 42077046 42082165 GST
Gma05g02357 05 44457871 44463320 Gma09g01654 09 42077046 42082165 PCT
Gma08g00487 08 4047066 4051106 Gma09g01654 09 42077046 42082165 PCT
Gma09g01654 09 42077046 42082165 Gma05g02357 05 44457871 44463320 PCT
Gma09g01654 09 42077046 42082165 Gma08g00487 08 4047066 4051106 PCT