Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01650 ATGAAAGTGTGCGAGAAGAAGAACAAGAGCCAACGCTGGAGAAGAAACACTAGAAGAAGAACAAGAGGCGTAAGGTGCAGAGGTCTTCGTCTTCCGAGGAACACTGCGTGGCCACACCGACACTGTCACCGCAATAGCCACCCCGACGACGACGGCATCATCGCTAACCGGCCACTCTCACTTTGTCAGCGACGTCGCTTTATCCTCCGACGCCGATTTCGCTGTCTCCGCCTCTGGGACATCTCCACCGGTGCCACCATGCGCCGTTTAATCGGACATGCCAAGGACGTTCTCTCCGTCGCGCTCGTGAACGACAGTGTTATCGTTTCTGGCTCACGTGACCACACCATCAAGGTGTGGAACACGTGCGGCACGTGCATGTCGATGGTGGATAACGGTGGCGGTGACAGTCCCACGGATTGGGTTTCATGCGTGCGGTTCATCCCGGACGTGGCGGCGGCACTGAGGGTGATGTCAGCGTCGTGGGACGGAAGCGTTAGGGTTTGGGACGTGGACGAGACGAGGACGTGGATGTGGACGGAGGCGGTGGCGCCGGGCGCGTCGTTGGCGGCGAGTGGGGGGAAGGATGGGGTGGTGCAGCTGTGGGACATGGCGGGTGGGGTGAAGATTTATGAGTTTGAGGTTTGTTCGGTTGTGCATTCATATGGGCTGTGTATTTGTCCCAACAGGTATTGGATGTGTATTGTCACGGATGAGAGAATTAGGGTTTGGGATTTGGAGAGTAAGGACATTATAAAGGATTTGAATGTCATTCATAACAACAAGGACAACAATTATATTAATGGTGGGACTGAGATTACTACCGACAAACAGGTTGGTCTTTAA 846 0.5437 MKVCEKKNKSQRWRRNTRRRTRGVRCRGLRLPRNTAWPHRHCHRNSHPDDDGIIANRPLSLCQRRRFILRRRFRCLRLWDISTGATMRRLIGHAKDVLSVALVNDSVIVSGSRDHTIKVWNTCGTCMSMVDNGGGDSPTDWVSCVRFIPDVAAALRVMSASWDGSVRVWDVDETRTWMWTEAVAPGASLAASGGKDGVVQLWDMAGGVKIYEFEVCSVVHSYGLCICPNRYWMCIVTDERIRVWDLESKDIIKDLNVIHNNKDNNYINGGTEITTDKQVGL 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01650 281 SMART WD40_4 123 170 IPR001680 GO:0005515
Gma09g01650 281 SMART WD40_4 83 121 IPR001680 GO:0005515
Gma09g01650 281 SMART WD40_4 206 245 IPR001680 GO:0005515
Gma09g01650 281 SMART WD40_4 172 203 IPR001680 GO:0005515
Gma09g01650 281 SUPERFAMILY WD40 repeat-like 75 260 IPR036322 GO:0005515
Gma09g01650 281 ProSitePatterns Trp-Asp (WD) repeats signature. 190 204 IPR019775 -
Gma09g01650 281 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Gma09g01650 281 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Gma09g01650 281 PRINTS G protein beta WD-40 repeat signature 157 171 IPR020472 -
Gma09g01650 281 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 90 121 - -
Gma09g01650 281 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 212 IPR001680 GO:0005515
Gma09g01650 281 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 76 278 IPR045223 GO:0015935|GO:0043022
Gma09g01650 281 ProSitePatterns Trp-Asp (WD) repeats signature. 157 171 IPR019775 -
Gma09g01650 281 PANTHER RECEPTOR FOR ACTIVATED C KINASE 1C 76 278 - -
Gma09g01650 281 MobiDBLite consensus disorder prediction 7 21 - -
Gma09g01650 281 MobiDBLite consensus disorder prediction 1 21 - -
Gma09g01650 281 Pfam WD domain, G-beta repeat 86 121 IPR001680 GO:0005515
Gma09g01650 281 Pfam WD domain, G-beta repeat 141 170 IPR001680 GO:0005515
Gma09g01650 281 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 172 IPR001680 GO:0005515
Gma09g01650 281 ProSiteProfiles Trp-Asp (WD) repeats profile. 90 121 IPR001680 GO:0005515
Gma09g01650 281 Gene3D - 71 280 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01650 Gma-Chr9 42015831 42017120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01650 78 246 U-box Gene Family AT2G33340 25.269 1.12e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01650 K14753 - gmx:100791022 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01650 09 42015831 42017120 Gma09g01650 09 42015831 42017120 ECH