Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01610 ATGGTGTTGGGGTGGAGGAGAAGGAAGGGCAGCAACAAAAACCGTCGCAAAGGTGGCAAATCCATCGCTGAGTTGGTGACTCCCAATCACTTCAGATGTCCAATTTCTCTTGACTTGATGAAGGATCCTGTGACATTGTCAACAGGGATAACCTACGATAGGGAGAGTGTGGAGATGTGGTTTGATGAAGGGAACATCACATGTCCTGTCACAAACCAGGTTGTGAGGAACTTTGACATGATTCCAAACCATTCCCTTAGGGTAATGATTCAAGATTGGTGTGTGGAGAATAGGCAACATGGGGTGGAGAGGATTCCAACACCAAGGATACCAATTGGCTCAATTGAGGTTGCTGAGCTTCTGATGCTAGTGAAGGCCTCGTCAACGGATTTGGACCAATATGGTTGCCTTGAATTGGTGCAGAAACTGAAGAGGTGGGGTGGTGAGAGTGAGAGGAACAAGAGGTGCATAGTGGACAATGGAGCACCTGTGGCATTGGCTTCATCATTTGATGCATTTGCCAATGATTCCATTGAGAGGAATGTGGTGCTTCTTGAGGAGATTTTGTCAGCACTCAATTGGATGTTTCCACTTCAATTGGAGGCACACAAGTCTTTGGGGTCTTTGGCTTCTCTAAGATGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAAGAGAAGTCCATTGTGGCATTGAAAGAGCTTCTGAAATTTGGTGATGTGAAGCATTTGGAGGCCTTGTCACAAATTGAAGGGGTCAATGAACTCTTGGTGGAGTTCATCAACAAGAGGATTAGTCCAACCATCACAAAGGCCTCATTGAGTGTGGTTTGGTACTTGGTTTCATCCTCTTCCAATTCAAGTGATAAGATGAGCTCTGAAGAAGGAAGGAACAAGGCTTGTGGGAATGATCTAACAATTCCTCTTTTGGTGAAGAAAATTCTGAGAGTTTCACCTTTGACAACAGACTATTCTGTTTCTGCGATTTGGAAACTGTGCAAGTTTGGAGAAAAAGATGAAGGGAGAACCCTTGTTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAGCTCTTGTTGGTGTTGCAAGTTGGATGTGGTGATGAGACTAAGGAGAAAGCAACTGAACTTCTCAAATTGCTCAATCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTTAAGAGATCATTTTAA 1209 0.4425 MVLGWRRRKGSNKNRRKGGKSIAELVTPNHFRCPISLDLMKDPVTLSTGITYDRESVEMWFDEGNITCPVTNQVVRNFDMIPNHSLRVMIQDWCVENRQHGVERIPTPRIPIGSIEVAELLMLVKASSTDLDQYGCLELVQKLKRWGGESERNKRCIVDNGAPVALASSFDAFANDSIERNVVLLEEILSALNWMFPLQLEAHKSLGSLASLRCMVWFLKHQDLSGKEKSIVALKELLKFGDVKHLEALSQIEGVNELLVEFINKRISPTITKASLSVVWYLVSSSSNSSDKMSSEEGRNKACGNDLTIPLLVKKILRVSPLTTDYSVSAIWKLCKFGEKDEGRTLVEALQVGAFQKLLLVLQVGCGDETKEKATELLKLLNPYRAELECIDSDYKNVKRSF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01610 402 CDD RING-Ubox_PUB 31 73 IPR045210 -
Gma09g01610 402 PANTHER WDSAM1 PROTEIN 16 286 IPR045185 GO:0061630
Gma09g01610 402 PANTHER WDSAM1 PROTEIN 293 402 IPR045185 GO:0061630
Gma09g01610 402 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 286 - -
Gma09g01610 402 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 293 402 - -
Gma09g01610 402 MobiDBLite consensus disorder prediction 1 20 - -
Gma09g01610 402 SUPERFAMILY RING/U-box 24 103 - -
Gma09g01610 402 MobiDBLite consensus disorder prediction 1 16 - -
Gma09g01610 402 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Gma09g01610 402 Pfam U-box domain 28 98 IPR003613 GO:0004842|GO:0016567
Gma09g01610 402 Gene3D - 122 392 IPR011989 -
Gma09g01610 402 SUPERFAMILY ARM repeat 137 381 IPR016024 -
Gma09g01610 402 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Gma09g01610 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 105 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01610 Gma-Chr9 41430793 41432109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01610 23 402 U-box Gene Family AT5G37490 40.241 1.06e-92 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01610 - - gmx:100817623 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00957 07 10595169 10596482 Gma09g01610 09 41430793 41432109 GST