Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01607 ATGAAGACTTTCACCTCAATTCAAACACCCCACCATTTTCCTTGCACACCTTTTTTCTCTCACTTTGCCAAAAGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCTTTTGCCAGGCAAAATCTGGCATAGATGGATCATTGAATTTGGAAGTGGTGTCTCCAACTCTGTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTATTAACCTTGTTTTTGAAGAAACAAGGTTTGAGCAATTCGGTCGCTGCTAGAACCATCAACAAGTCAGATCTTTTCATTGATCACCTTGTCTCAAAGCTTCATTCTAAACACAAATCTTGGTATCTCGCAGGTAGAGAGCTTACAACTCTGGAGATCAGGGACTCTCTAATCCCATATCTTGAGTCTCTTTTTGAAGAGCATGGAGACCTTCTAGTGGATGTAGTGGAAAACTATCCAAATCCACCTGTTAAGGATAAATCAGATGTGCCAGTTCCTCCTTCTAGTCCAGTATTAGACTCTAAGAAGCTTAAAGCCGTGTCTCGAGTGAGCGCGATGGACCCAGATGGTGGCAATCTCCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATAAGGAGTATCACACGACGATTCCCATCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTAGTTGAGTTTTTTCTTGAACTTGGAGTGCCAAAAGAGCACATTCCCACTATCCTCAGCAAAAGGCCTCAATTATGTGGAATCAGTCTATCTGAAAATCTTAAACCCGCCATGAAGTTCTTAGAATCTTTGGGAGTTGACAAGAAGCAATGGCCAAAGGTGATCTATCGCTTCCCGGCCCTGCTAACTTATAGCAGGCAGAAAGTGATGGAAAGCATAGATTTTCTCCATGAATTTGGCCTCTCAGAAGAGAGTATTGGTAAGATTTTAACTCGTTGCCCCAATATCGTTAGTTATAGTGTAGAGGACAATCTCCGACCAACGGCTAATTACTTCTGTTCTTTGGGGGTTGATGTTGGGATTCTTCTATTCAGATGTCCACAGAATTTTGGTCTTAGCATTGAGGCCAACCTAAAGCCTATAACAACATTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGCTTGACTGAGAATCTGATTCCAAAATGGGATTTCTTTTTGACCACAGGTTACCAAAAATCTGATCTGGTTAAGTTCCCTCAATATTTTGGATACAGTTTAGAGGAAAGGATTAAGCCTAGATTTGTAATTATGAAAAAATCTGGAGTGAAGTTACTCCTTAATCAGAAAGTATTTCTTGAGAAGATTCTAAATGAAAACCATGGACTTCCATGTTTCTGCCATGGACACTCAACAGGTGCAGCCATTACTCTTAAGGCACTGCTTGATCCAAAGGTTGAAGCTAGCATAGTTGGTGCTACATTCACATCACCAGCAGTTGGAGTGGAGCCTTCTCATCCAATTTTGGTGGCACTTGCGCCTATAGTTTCATTTTTGCTGCCAACATATCAATGTAATTCTGCATATAAAAAGGGGTTGCCAGTTTCTCGAGATCCGGACGCTCTAATTGCTAAATATTCAGATCCATTAGTATGCACAGGATCTCTTAGAGTACGTACCGGCTATGAGATTCTTCGAACTACGAGCTACTTGCAACAAAATCTCAGAAAACTGAGAGTTTCCATTTCAAGTTCTCCATGCTGA 1761 0.4123 MKTFTSIQTPHHFPCTPFFSHFAKRTQLSFPAKVFFCQAKSGIDGSLNLEVVSPTLLAAEKEEAKAVLTLFLKKQGLSNSVAARTINKSDLFIDHLVSKLHSKHKSWYLAGRELTTLEIRDSLIPYLESLFEEHGDLLVDVVENYPNPPVKDKSDVPVPPSSPVLDSKKLKAVSRVSAMDPDGGNLRPHIVYLMELGMDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKEHIPTILSKRPQLCGISLSENLKPAMKFLESLGVDKKQWPKVIYRFPALLTYSRQKVMESIDFLHEFGLSEESIGKILTRCPNIVSYSVEDNLRPTANYFCSLGVDVGILLFRCPQNFGLSIEANLKPITTFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYQKSDLVKFPQYFGYSLEERIKPRFVIMKKSGVKLLLNQKVFLEKILNENHGLPCFCHGHSTGAAITLKALLDPKVEASIVGATFTSPAVGVEPSHPILVALAPIVSFLLPTYQCNSAYKKGLPVSRDPDALIAKYSDPLVCTGSLRVRTGYEILRTTSYLQQNLRKLRVSISSSPC 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01607 586 Pfam mTERF 190 371 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 Pfam mTERF 349 456 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 Gene3D Transcription termination factor 3, mitochondrial 248 460 IPR038538 -
Gma09g01607 586 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 SMART mt_12 167 199 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 Pfam Serine aminopeptidase, S33 449 580 IPR022742 -
Gma09g01607 586 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF5, CHLOROPLASTIC 23 452 - -
Gma09g01607 586 PANTHER CGI-12 PROTEIN-RELATED 23 452 IPR003690 GO:0003690|GO:0006355
Gma09g01607 586 SUPERFAMILY alpha/beta-Hydrolases 451 504 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01607 Gma-Chr9 41395295 41400548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01607 449 579 Acyl Lipid Metabolism Gene Families AT1G73480 70.229 4.62e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gma09g01607 mTERF 8.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01607 K15032 K12177 gmx:100816032 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00961 07 10637812 10641892 Gma09g01607 09 41395295 41400548 GST
Gma05g02403 05 44796589 44798389 Gma09g01607 09 41395295 41400548 PCT
Gma08g00541 08 4424087 4426814 Gma09g01607 09 41395295 41400548 PCT