Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01600 ATGGAGAACTCATCATCATCATCTTCATGTTCAAACTATCTCTACCGAGAGTGCCTCCGCAACCATGCAGCCAGCCTCGGTAGCTACGCTACCGACGGCTGTGGGGAGTTCACCCTGGACGTGGACAGCGTCTCGTCCCCCTCCCTCCAGTGCGCAGCCTGCGGCTGCCATCGCAACTTCCACCGCAAGGTCACGTGCCCCGCGGTGGAAGGAGGGTTGCAGGCCGTGACTGGAGGGAGTGGGGACATGATGGAGTACTCCGGGGGCGGAGACGTGGGAAGAATAACGGAGATGGGAGAGAGGAGTGGCGGCAGCAAGAAGAGGTTCAGGACGAAGTTCAGTGCTGAGCAGAAGGAGAAGATGCTGGGGTTCGCGGAAAAGCTGGGGTGGAAGCTGCAGAGAAAAGAGGTGGATGATGAGATTGAGAGGTTCTGTAAAAGTGTGGGTGTCACTAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACAACTCCAACACTTCTACTAATTCTTCTGCTAATCTCTCTTCTCTCACTCAGTCATGA 549 0.5483 MENSSSSSSCSNYLYRECLRNHAASLGSYATDGCGEFTLDVDSVSSPSLQCAACGCHRNFHRKVTCPAVEGGLQAVTGGSGDMMEYSGGGDVGRITEMGERSGGSKKRFRTKFSAEQKEKMLGFAEKLGWKLQRKEVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNTSTNSSANLSSLTQS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01600 182 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 11 172 - -
Gma09g01600 182 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 15 63 IPR006456 -
Gma09g01600 182 SUPERFAMILY Homeodomain-like 96 165 IPR009057 -
Gma09g01600 182 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 172 - -
Gma09g01600 182 MobiDBLite consensus disorder prediction 162 182 - -
Gma09g01600 182 MobiDBLite consensus disorder prediction 88 111 - -
Gma09g01600 182 Pfam ZF-HD protein dimerisation region 13 65 IPR006456 -
Gma09g01600 182 Gene3D - 92 170 - -
Gma09g01600 182 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 15 64 IPR006456 -
Gma09g01600 182 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 106 164 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01600 Gma-Chr9 41303976 41304707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01600 15 164 ZF-HD Transcription Factor Family AT4G24660 45.833 3.02e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma09g01600 ZF-HD_dimer 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01600 - - gmx:547765 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00972 07 10778504 10779034 Gma09g01600 09 41303976 41304707 GST
Gma05g02404 05 44804027 44804485 Gma09g01600 09 41303976 41304707 PCT
Gma08g00542 08 4432820 4433278 Gma09g01600 09 41303976 41304707 PCT
Gma09g01600 09 41303976 41304707 Gma05g02404 05 44804027 44804485 PCT
Gma09g01600 09 41303976 41304707 Gma08g00542 08 4432820 4433278 PCT