Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01597 ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCGCCGAAGACGTTGTTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTACTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAGCCAACTTGCTTGCACCATGACCCATGTCATGCCTTGGGTGACCTTGTTGGAATTAAGAAGCATTTCAGGAGGAAGCACAGCAATCATAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACGTGTGGCACCCGGGGCCACTCTTGTGATTGTGGCCGCGTTTTCTCAAGGGTTGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCTGAGTCTCAACCTCTTCAACCATCTGCATGCCTTTCTAGAACAGCCTCAAGCCCGAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCATGGCCAACAAGGATGATAATACCAAAGCCATCAGAACCACCAACAATCTTCATGAATAACCCTATTACTGCTATCACCACTGCTGAAACCTCATCCAAGAGCAACAACAAACTACTCCACCCCAACTTGGATCTTCAACTCTCCACCCCCACCACCACCAACAACACATCAAATGTTGCAAACCGTATTGATGCTGCAATATCACCTAAGAGGGATCATCATCATCATCATGAGAACCATTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATATGAGTGAGAAGAACGAATCAAACAGGAACTCATCAGAGAAGAGCAGCAACAGCAACATTAATGATCAGAATAATAATAATAAGCAGTCCAACAACATGGCCTTGTTGAGGGTTCAAGAGCAAGCAAGGGAGCACTTGAGGATAGCCATGGCAGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCAAAGAGACAGATTGAGCTGGCGGAGCAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAAGCGGAACTCGACAAAGCCTACTCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCATGGTTGCAAACAACAGTTCCAAGCTCGAAATGCAGCAACCACCCCCGATGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATTACCACGGAAGGAGGAGGAGAAGTAGAAAATGATAATAATGCAAAAGATCATGGCAAAGACAACAACTAA 1425 0.4681 MLANNLSPSSVPTSEPFPCTENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRMIIPKPSEPPTIFMNNPITAITTAETSSKSNNKLLHPNLDLQLSTPTTTNNTSNVANRIDAAISPKRDHHHHHENHSTHLQLSIGSSDMSEKNESNRNSSEKSSNSNINDQNNNNKQSNNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYSLKEHAMKQINSTMLQITCHGCKQQFQARNAATTPDENSLVLSYVSSAITTEGGGEVENDNNAKDHGKDNN 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01597 474 PANTHER OS03G0310200 PROTEIN 1 455 IPR039288 GO:0009630
Gma09g01597 474 Gene3D Classic Zinc Finger 35 97 - -
Gma09g01597 474 MobiDBLite consensus disorder prediction 288 342 - -
Gma09g01597 474 MobiDBLite consensus disorder prediction 194 220 - -
Gma09g01597 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Gma09g01597 474 Gene3D Classic Zinc Finger 119 195 - -
Gma09g01597 474 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Gma09g01597 474 MobiDBLite consensus disorder prediction 1 24 - -
Gma09g01597 474 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Gma09g01597 474 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Gma09g01597 474 MobiDBLite consensus disorder prediction 302 342 - -
Gma09g01597 474 MobiDBLite consensus disorder prediction 193 237 - -
Gma09g01597 474 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 455 - -
Gma09g01597 474 Coils Coil 357 412 - -
Gma09g01597 474 MobiDBLite consensus disorder prediction 454 474 - -
Gma09g01597 474 MobiDBLite consensus disorder prediction 1 44 - -
Gma09g01597 474 SMART c2h2final6 57 79 IPR013087 -
Gma09g01597 474 SMART c2h2final6 98 128 IPR013087 -
Gma09g01597 474 SMART c2h2final6 134 161 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01597 Gma-Chr9 41260331 41263406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01597 20 462 C2H2 Transcription Factor Family AT2G01940 51.515 4.18e-139 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma09g01597 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01597 K25871 - gmx:100800187 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00975 07 10816309 10819730 Gma09g01597 09 41260331 41263406 GST
Gma05g02405 05 44815939 44817448 Gma09g01597 09 41260331 41263406 PCT
Gma08g00543 08 4442994 4444840 Gma09g01597 09 41260331 41263406 PCT
Gma09g01597 09 41260331 41263406 Gma05g02405 05 44815939 44817448 PCT
Gma09g01597 09 41260331 41263406 Gma08g00543 08 4442994 4444840 PCT