Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01579 ATGGAGTTTGGAAGTGGTTCTCCTGGTGATCACCATCATCACCATGATGGTTCTTCTGATTCCCAGAGAAGGAAGAAGCGTTACCACCGTCACACAGCTAACCAGATTCAGAGGCTTGAATCGATGTTCAAGGAGTGTCCGCACCCAGATGAGAAGCAGAGGTTGCAGTTGAGTAGGGAGTTAGGCTTGGCGCCTAGACAGATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGACAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGTCCTCCTATGAATGATGATTGTTATTTTGATGAACAGAAGTTGAGATTGGAGAATGCCCAACTCAAAGAGGAGCTTGATAGAGTATCTAGCATTGCAGCTAAGTACATTGGAAGGCCAATTTCTCAACTCCCACCTGTTCAGCCTATTCACATATCTTCTCTGGACCTGTCAATGGGGACTTTTGCAAGCCAAGGGTTGGGTGGCCCTTCACTTGATCTTGATCTTCTCCCTGGGAGTTCTTCATCACCCATGCTGAATGTGCCTCCTTTCCAACCAGCATGTCTCTCGGACATGGATAAGTCCCTCATGTCAGACATTGCCTCAAATGCCATGGAGGAAATGATCAGGCTATTGCAAACGAATGAGCCCTTGTGGATGAAAGGTGCTGATGGGAGGGATGTCCTTGATCTTGATTCCTATGAGAGAATGTTCCCCAAGGCTAATAGTCACTTGAAGAACCCCAATGTTCATGTTGAAGCTTCTAGAGATTCAGGAGTTGTAATTATGAACGGCTTAACTTTGGTTGACATGTTTATGGACCCGAACAAGTGGATGGAGCTATTTCCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGTAGCCATAGTGGTTCTTTGCAATTGATGTATGAAGAGTTGCAAGTACTTTCTCCACTTGTTTCTACTAGAGAGTTCTACTTTCTGCGTTACTGTCAGCAAATTGAACAAGGCTTATGGGCAATAGTAGATGTTTCATATGATTTCCCTCAAGATAATCAATTTGCTCCTCAATATCGATCCCATCGTCTTCCTTCTGGTGTCTTTATCCAAGATATGCCTAATGGATATTCCAAGGTTACTTGGATTGAACATGTAGAGATTGAAGACAAAACTCCAGTTCATAGGCTCTATAGAAACCTTATTTATAGTGGCATTGCATTTGGAGCACAAAGATGGCTAACTACACTTCAGAGGATGTGTGAAAGGATTGCTTGTCTAATGGTGACAGGCAATTCAACCCGTGATCTTGGAGGAGTGATTCCCTCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCACAAAGAATGGTCACCAATTTTTGTGCAAGCATTAGTGCATCAGCTGGTCATAGATGGACCACACTCTCTGGGAGTGGCATGAATGAGATTGGAGTCAGAGTCACTGTGCATAAGAGCTCAGACCCTGGCCAACCTAATGGTGTGGTGCTAAGTGCAGCCACCACCATTTGGCTCCCCATCCCTCCACAAACTGTGTTCAATTTCTTTAAGGATGAAAAGAAAAGGCCTCAGTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATATCTGTGCTTCGAGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCCTCAGGTTCCCTAGTGGTGTACTGTCCAGTTGATCTGCCAGCCATCAACATAGCAATGAGTGGTGAGGACCCTTCCTACATCCCCCTCCTCCCCTCAGGCTTCACCATTTCCCCGGACGGCCAAGCTGACCAAGACGGCGGAGGAGCCTCGACCAGCACAAGCACAGGCAGCAGGGTCATGGGGGGTGGTTCTGGTCCTGGTTCTGGTGGCTCACTCATCACTGTTGCATTCCAAATCCTAGTGAGTAGCTTGCCATCTGCCAAACTCAACATGGAGTCGGTGACCACTGTTAATAGCCTCATTGGCAACACTGTCCAACACATTAAGGCTGCTTTGAATTGTCCTAGTTCCTGA 2169 0.4638 MEFGSGSPGDHHHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPMNDDCYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGTFASQGLGGPSLDLDLLPGSSSSPMLNVPPFQPACLSDMDKSLMSDIASNAMEEMIRLLQTNEPLWMKGADGRDVLDLDSYERMFPKANSHLKNPNVHVEASRDSGVVIMNGLTLVDMFMDPNKWMELFPTIVTMARTIEVISSGMMGSHSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQYRSHRLPSGVFIQDMPNGYSKVTWIEHVEIEDKTPVHRLYRNLIYSGIAFGAQRWLTTLQRMCERIACLMVTGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASAGHRWTTLSGSGMNEIGVRVTVHKSSDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDEKKRPQWDVLSNGNAVQEVAHIANGPHPGNCISVLRAFNSSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQADQDGGGASTSTSTGSRVMGGGSGPGSGGSLITVAFQILVSSLPSAKLNMESVTTVNSLIGNTVQHIKAALNCPSS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01579 722 SUPERFAMILY Homeodomain-like 5 82 IPR009057 -
Gma09g01579 722 Gene3D - 225 448 IPR023393 -
Gma09g01579 722 MobiDBLite consensus disorder prediction 649 666 - -
Gma09g01579 722 CDD homeodomain 24 83 IPR001356 GO:0003677
Gma09g01579 722 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 720 IPR042160 -
Gma09g01579 722 Coils Coil 130 150 - -
Gma09g01579 722 MobiDBLite consensus disorder prediction 642 669 - -
Gma09g01579 722 SMART HOX_1 23 86 IPR001356 GO:0003677
Gma09g01579 722 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Gma09g01579 722 MobiDBLite consensus disorder prediction 1 23 - -
Gma09g01579 722 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 16 720 - -
Gma09g01579 722 Pfam START domain 225 448 IPR002913 GO:0008289
Gma09g01579 722 ProSiteProfiles START domain profile. 215 451 IPR002913 GO:0008289
Gma09g01579 722 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Gma09g01579 722 CDD START_ArGLABRA2_like 219 447 - -
Gma09g01579 722 Gene3D - 10 96 - -
Gma09g01579 722 SUPERFAMILY Bet v1-like 469 714 - -
Gma09g01579 722 MobiDBLite consensus disorder prediction 1 32 - -
Gma09g01579 722 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Gma09g01579 722 SMART START_1 224 448 IPR002913 GO:0008289
Gma09g01579 722 SUPERFAMILY Bet v1-like 216 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01579 Gma-Chr9 40993985 40997390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01579 20 722 Homeobox Transcription Factor Family AT1G73360 66.291 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma09g01579 START 1.9e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01579 K09338 - gmx:100809075 1361.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01579 09 40993985 40997390 Gma09g01579 09 40993985 40997390 ECH
Gma16g01753 16 38694601 38698098 Gma09g01579 09 40993985 40997390 GST
Gma05g02410 05 44875319 44878198 Gma09g01579 09 40993985 40997390 PCT
Gma08g00548 08 4502389 4505890 Gma09g01579 09 40993985 40997390 PCT
Gma09g01579 09 40993985 40997390 Gma05g02410 05 44875319 44878198 PCT
Gma09g01579 09 40993985 40997390 Gma08g00548 08 4502389 4505890 PCT