Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01560 ATGAGCGGAAAAGCCTCCGTCTCTAAGGAGCTCCATGCCAAGCACACCAAGATATTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAGGACCAAGGCACCACGATGGGCAAGTGTGAACTTAGGGATATTCATTTGCATGCAATGTTCAGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTGCGGTCCACAACTTTGGATACATGGTTGCCAGATCAAATTTCTTTTATGCAATTAATGGGTAATGCGAAGTCAAATAAGCACTGGGAGGCAGAATTACCGCCAAATTTTGACAGAAATGGATATGGAGTCGAGAAGTTTATTCGTTCCAAGTATGTGGAGAAAAGATGGGCTTCAAAAGGTGGACTACAACCAGCTTCAAAGTCAGCTGAAATAATCTTTAACTCGAATAAGTCACCAGCTTCTGGGGCCAAGAGTGCTATTCAGAATAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAAACACATGGCACAAATTCGGTCTCCAATAACGAGATCTCATGAGGGCTCCTCAGATTTGCAAAAGAAGAATTCACCACCACCAATAAGGAGGCCATCTGCATCATTTGATTTTGACTACTCTAGGGGAAAGAACAATGCTGGACAACATTTGATTGAAAAGGCTTATGAGGTGTATGTTTGTAGATTGTTGAGCTAG 702 0.4302 MSGKASVSKELHAKHTKILEGLVKLPDNRECADCRTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQISFMQLMGNAKSNKHWEAELPPNFDRNGYGVEKFIRSKYVEKRWASKGGLQPASKSAEIIFNSNKSPASGAKSAIQNRRLSLEESILVKHMAQIRSPITRSHEGSSDLQKKNSPPPIRRPSASFDFDYSRGKNNAGQHLIEKAYEVYVCRLLS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01560 233 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Gma09g01560 233 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Gma09g01560 233 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 218 - -
Gma09g01560 233 MobiDBLite consensus disorder prediction 178 208 - -
Gma09g01560 233 MobiDBLite consensus disorder prediction 178 192 - -
Gma09g01560 233 CDD ArfGap 19 119 - -
Gma09g01560 233 SMART arf_gap_3 5 132 IPR001164 GO:0005096
Gma09g01560 233 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Gma09g01560 233 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 218 IPR044520 GO:0005096
Gma09g01560 233 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
Gma09g01560 233 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Gma09g01560 233 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Gma09g01560 233 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01560 Gma-Chr9 40704473 40707574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01560 19 119 C2H2 Transcription Factor Family AT4G05330 47.664 7.71e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01560 K12486 - gmx:100802691 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g01560 09 40704473 40707574 Gma09g01560 09 40704473 40707574 ECH
Gma16g01737 16 38482705 38487237 Gma09g01560 09 40704473 40707574 GST
Gma08g00551 08 4520116 4526808 Gma09g01560 09 40704473 40707574 PCT
Gma09g01560 09 40704473 40707574 Gma08g00551 08 4520116 4526808 PCT