Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01495 ATGAAATTGTTATATAAATACGTTCACCGTCGCTTCCATTTAATCGCTTACTGTGTTCTTCTTCATCCCCATTTTAGGCAAAGTATGCCTTTGAAGGAATCAAGAATATCCTGTACTCTCTCAGATTTCATGCCTGCCATGAAAAAGAATCCTGAGCAGACTCATTTTGGATCTGTATTCAACAAGTTAGGGAAGGAGCTTGGAGAACCTGTAGACTTTGAACTTCCAGATTGGTTTAATAAATCAAAGCCAATGCAGTACACCTATATAAAACGCAATATATATCTCACTAAGAAGGTCAAGAGATCCCGATTTGATGATGATGGCATATTCTGTTCATGTACTCCTTCCCCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGAATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCCTGTCTCAACAAACCATTTCAGAATCGTCCTGTGAAAAAGATGAAATTAGTCAAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCTTGGGGAGTTTGTCATTGAATATGTTGGAGAAGTCATTGATGACAAAACATGTGAGGAAAGGCTTTGGAACATGAAACATCGTGGGGAAACAAACTTCTACTTATGTGAAATCAACCGAGATATGGTGATAGATGCCACATATAAGGGAAACAAATCAAGATACATCAATCATAGCTGCTGCCCCAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTAGTGACATACAAAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGAGTGTAGGCGTAAGTTGGGTGTCCGACCTACCAAGCCTAAACTTTCTTCTGATGCTACATTAAAATTAGTGGCATATCAGGTGGCTTCATCTTCTCGTAAAAATTCTCGAAGTTCTCGTGTTGTTGACCAACCAAAGTGCTTACACAATTGCATTGGTGAAGTTATTAGGATAAAACAACTTGGAAATGAGAGGTTTGGAATTATTAAACGATTTGATAAATATTCCCGAAAACACTCGATCATGTTTGAGGATGGTTGTGTTGAAATTTATGACATGTCAAAAGAGGACTGGGAACTTGTGAGATAG 1179 0.3927 MKLLYKYVHRRFHLIAYCVLLHPHFRQSMPLKESRISCTLSDFMPAMKKNPEQTHFGSVFNKLGKELGEPVDFELPDWFNKSKPMQYTYIKRNIYLTKKVKRSRFDDDGIFCSCTPSPGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATSDIQKGEHLTYDYQFVQFGADQDCHCGAAECRRKLGVRPTKPKLSSDATLKLVAYQVASSSRKNSRSSRVVDQPKCLHNCIGEVIRIKQLGNERFGIIKRFDKYSRKHSIMFEDGCVEIYDMSKEDWELVR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01495 392 SUPERFAMILY SET domain 69 287 IPR046341 -
Gma09g01495 392 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 80 336 IPR025787 -
Gma09g01495 392 SMART shorttest3 107 157 IPR006560 GO:0005634|GO:0018024
Gma09g01495 392 SMART set_7 158 281 IPR001214 GO:0005515
Gma09g01495 392 Gene3D SET domain 77 314 IPR046341 -
Gma09g01495 392 SMART PostSET_3 281 297 IPR003616 -
Gma09g01495 392 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 333 390 - -
Gma09g01495 392 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 56 324 - -
Gma09g01495 392 ProSiteProfiles SET domain profile. 158 275 IPR001214 GO:0005515
Gma09g01495 392 ProSiteProfiles Post-SET domain profile. 281 297 IPR003616 -
Gma09g01495 392 Pfam SET domain 169 274 IPR001214 GO:0005515
Gma09g01495 392 PANTHER SET DOMAIN PROTEINS 333 390 - -
Gma09g01495 392 PANTHER SET DOMAIN PROTEINS 56 324 - -
Gma09g01495 392 ProSiteProfiles AWS domain profile. 107 156 IPR006560 GO:0005634|GO:0018024
Gma09g01495 392 CDD SET_ASHR3-like 159 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01495 Gma-Chr9 39708246 39718052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01495 131 296 C2H2 Transcription Factor Family AT2G23740 34.946 4.16e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma09g01495 SET 5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01495 - - gmx:100808183 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01692 16 37870238 37887818 Gma09g01495 09 39708246 39718052 GST