Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01439 ATGAATCTGCTTCCTTCAGCCCCCATATCCAAAGTTGATGACAGTTTAGAGCATTCATTGAGTTTTGAGAGTACCATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGCCCCCACCATCACCTGCAACACAAAATGTCCCAAGATCTGATTCTGGATGATTATGCTTCTCTGGATGCCAATGATTCCAACCAAAAATTCAGCACTAGTAGCATCAGCCAACCAACAAAGAAACTTTTCTATGGGGCAAATAAAAAGAATCATGACTACTCTAACGAACATAAGAAGAAGATGATTCATAAGGAGATTGAGAGGCAAAGGAGACAAGAAATGGCTACCTTCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGCACATGCAGAAACATATCAAAGAGCTTGGTGCCAAGAGAGATGAACTGAAGAAACTCTCCAATCATTCCAATAATATGGAAAATAACCATGAGGGCTTGCATACATCTTGCAACTTCACTGTCCACGAGAAAAATGGTATTATGGGAATAGAAATCACCAGTGTCTTCAGAGAGGAAAAGCCTAAAATTTCAAAGTTACTACAGTTTTTGACTGAAGAAGGACTTGAAGTTGTTAGTTTCTTTTCAACAGAAGTCAATGGCAGATTGCTCCACAGTGTGCAGTGTGAGGTGAACCATTCCAACAGTGTAGATCCATCTGAGCTGAGAAAGAAAGTTTCCAAAGCATTTTCAACCTTTAGATGCTCTGATTGA 822 0.4002 MNLLPSAPISKVDDSLEHSLSFESTMFPLQRGNELVIQFSNSPHHHLQHKMSQDLILDDYASLDANDSNQKFSTSSISQPTKKLFYGANKKNHDYSNEHKKKMIHKEIERQRRQEMATFYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQKHIKELGAKRDELKKLSNHSNNMENNHEGLHTSCNFTVHEKNGIMGIEITSVFREEKPKISKLLQFLTEEGLEVVSFFSTEVNGRLLHSVQCEVNHSNSVDPSELRKKVSKAFSTFRCSD 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01439 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 171 IPR036638 GO:0046983
Gma09g01439 273 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 26 271 IPR015660 GO:0003700|GO:0006357
Gma09g01439 273 Gene3D - 91 187 IPR036638 GO:0046983
Gma09g01439 273 CDD bHLH_AtORG2_like 101 177 - -
Gma09g01439 273 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 26 271 - -
Gma09g01439 273 SMART finulus 106 158 IPR011598 GO:0046983
Gma09g01439 273 Coils Coil 149 179 - -
Gma09g01439 273 Pfam Helix-loop-helix DNA-binding domain 101 153 IPR011598 GO:0046983
Gma09g01439 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 152 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01439 Gma-Chr9 38734399 38736309 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01439 97 264 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 45.143 4.05e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma09g01439 HLH 7.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01439 - - gmx:100796473 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01647 16 37460537 37461667 Gma09g01439 09 38734399 38736309 GST
Gma09g01439 09 38734399 38736309 Gma10g02285 10 50457781 50459564 PCT
Gma09g01439 09 38734399 38736309 Gma20g01430 20 41420525 41422065 PCT
Gma10g02285 10 50457781 50459564 Gma09g01439 09 38734399 38736309 PCT
Gma20g01430 20 41420525 41422065 Gma09g01439 09 38734399 38736309 PCT