Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01438 ATGATCTTTGTACAAGTGAAAGGGCAAGGAAAGAGTAGCAAGCACTTGCATGTTGAGGAGAAAGAAGACTTTATTGCCATGGATGAGAACAAGAAGTGGATGCATAAAGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCGCCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATTATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGCAAGCAAAGAGGGATGAGTTAGTGAAGGTGTCTAATTTGAAGAGTAATATTTGTTCTGAGAATGAAAGCTCTAGCAGTAGCACTACTCATCTTCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCGGTTACAGCTTCGGGAAAAGTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGATTAATGTGGTTAGCACTACTTCAATCAGAAGAGATGGAAGATTCATACACACTATACGATCAGAGGATCCAAATCATTTGAATATGACTGGCGCTGATTACTCCGAATTGCAAATAAAGCTAACGGAGGCAATAAGTTTGCAAGAGACTTTGCCTGAACATGAAAATTGA 648 0.4028 MIFVQVKGQGKSSKHLHVEEKEDFIAMDENKKWMHKETERQRRQEMGKLCATLRSLLPLEYIKGKRSTSDYVNEAMNYINHLQNKVKQLQAKRDELVKVSNLKSNICSENESSSSSTTHLPPLVSVHPFPGGLEIMCGYSFGKSVFPMSRVLDILLKEGINVVSTTSIRRDGRFIHTIRSEDPNHLNMTGADYSELQIKLTEAISLQETLPEHEN 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01438 215 Pfam Helix-loop-helix DNA-binding domain 32 83 IPR011598 GO:0046983
Gma09g01438 215 Coils Coil 72 99 - -
Gma09g01438 215 PANTHER TRANSCRIPTION FACTOR 11 207 - -
Gma09g01438 215 CDD bHLH_AtORG2_like 31 107 - -
Gma09g01438 215 Gene3D - 23 110 IPR036638 GO:0046983
Gma09g01438 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 82 IPR011598 GO:0046983
Gma09g01438 215 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 207 IPR015660 GO:0003700|GO:0006357
Gma09g01438 215 SMART finulus 36 88 IPR011598 GO:0046983
Gma09g01438 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 98 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01438 Gma-Chr9 38702737 38704494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01438 35 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 40.909 2.15e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma09g01438 HLH 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01438 - - gmx:100795953 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01646 16 37443602 37444974 Gma09g01438 09 38702737 38704494 GST
Gma09g01438 09 38702737 38704494 Gma10g02284 10 50440229 50441741 PCT
Gma09g01438 09 38702737 38704494 Gma20g01431 20 41428053 41428616 PCT
Gma10g02284 10 50440229 50441741 Gma09g01438 09 38702737 38704494 PCT
Gma20g01431 20 41428053 41428616 Gma09g01438 09 38702737 38704494 PCT