Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01428 ATGGGAAGAGGAAGGGTTGTTCTGGAAAGAATAGAGAACAAGATCAACCGTCAAGTAACATTCTCAAAACGCAGAAGTGGGTTGCTGAAGAAGGCCTTTGAGCTTTCTGTGCTATGTGATGCTGAAGTTGGCCTTATCATCTTTTCTAGCCGTGGCAAGCTTTTTCAGTACAGCAGCACTGATATTACCAAAATCATTGAGAGGTATCGCCAATGTCGTTACAGCAAGTCACACACTGGTGATTCATTGGAACACGATTCACAGAGCGCATACCATGAATTCTTGAAATTAAGAGCGAAATATGAATCTCTTGAGCGGACACAAAGGCATTTTCAAGGAGAAGACCTTGAGCCACTTAGCTTTAAAGATTTGCAGAGCCTGGAGAAGCAACTAGACATAACGCTCGCACTAACTCGACAGCACCAAACGAAGAAACTCATGGCACGAGCGGATGAATTACGCGAAAAGGTGCATAAGTTGGAGGATCTTAACAAACAATTGGAGTCCAAGGTTTTCTCTTTAAATAACCATGAAAAAGATGAATTCTCGAGTCTCATCCTTGACAATAACAATTACATTCAAATGCATGCTACACAAGTTGATCAATTTGAGTCTGAGACAGCACTAAACACATGTAGGTTTCAACATCAAGAAGTTGTTTCTAAGGAAAAAGCAATTGATACCAGGACAGAGCATAGTCAAAGCAGTCACAACAAAAACAATGGATGGCTGTAA 735 0.4095 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVGLIIFSSRGKLFQYSSTDITKIIERYRQCRYSKSHTGDSLEHDSQSAYHEFLKLRAKYESLERTQRHFQGEDLEPLSFKDLQSLEKQLDITLALTRQHQTKKLMARADELREKVHKLEDLNKQLESKVFSLNNHEKDEFSSLILDNNNYIQMHATQVDQFESETALNTCRFQHQEVVSKEKAIDTRTEHSQSSHNKNNGWL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01428 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma09g01428 244 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Gma09g01428 244 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma09g01428 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 244 - -
Gma09g01428 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma09g01428 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma09g01428 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma09g01428 244 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma09g01428 244 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Gma09g01428 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma09g01428 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma09g01428 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma09g01428 244 Coils Coil 143 180 - -
Gma09g01428 244 MobiDBLite consensus disorder prediction 223 244 - -
Gma09g01428 244 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gma09g01428 244 PANTHER MADS BOX PROTEIN 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01428 Gma-Chr9 38483862 38493811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01428 1 185 MADS-box Gene Family AT2G45650 55.135 7.93e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma09g01428 K-box 1.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01428 K09264 - gmx:100793681 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01640 16 37336189 37343500 Gma09g01428 09 38483862 38493811 GST
Gma10g02280 10 50381735 50386248 Gma09g01428 09 38483862 38493811 PCT