Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01413 ATGTTTACCTTGAATCATTCTTCTGATTTGTACCATGTTTCCCCTGAGCTCTCATCTTCCTTGGACACATCCTCGCCGGCTTCGGAGGGCTCTCGTGGCGTGGCATTTTCCGACGAGGAGGTGCGGCTGGCGGTGAGGCACCCGAAGAAGCGGGCAGGTCGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTACCGGGGGGTGAGGAGGAGGAACTCGGATAAGTGGGTGTGTGAGGTGAGGGAGCCCAACAAGAAGACCAGGATTTGGCTGGGGACTTTCCCCACGCCGGAGATGGCGGCTCGGGCGCACGACGTGGCGGCAATGGCCCTGAGGGGCCGGTATGCCTGTCTAAACTTTGCTGACTCGGCCTGGCGGTTACCTGTTCCCGCCACGGCCGAGGCAAAGGATATACAGAAGGCAGCAGCAGAAGCTGCCCAGGCTTTCAGACCAGATCAAACCTTAAAAAATGCTAATACAAGGCAGGAGTGTGTGGAGGCGGTGGCGGTGGCGGTGGCGGAGACAACAACGGCGACGGCACAAGGGGTGTTTTATATGGAGGAAGAAGAGCAGGTGTTGGATATGCCTGAGTTGCTTAGGAATATGGTGCTCATGTCCCCAACACATTGCTTAGGGTATGAGTATGAAGATGCTGACTTGGATGCCCAAGATGCTGAGGTGTCACTATGGAATTTCTCAATTTAA 705 0.5617 MFTLNHSSDLYHVSPELSSSLDTSSPASEGSRGVAFSDEEVRLAVRHPKKRAGRKKFRETRHPVYRGVRRRNSDKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSAWRLPVPATAEAKDIQKAAAEAAQAFRPDQTLKNANTRQECVEAVAVAVAETTTATAQGVFYMEEEEQVLDMPELLRNMVLMSPTHCLGYEYEDADLDAQDAEVSLWNFSI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01413 234 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Gma09g01413 234 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Gma09g01413 234 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Gma09g01413 234 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Gma09g01413 234 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 234 - -
Gma09g01413 234 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 234 IPR045277 GO:0003700
Gma09g01413 234 MobiDBLite consensus disorder prediction 15 34 - -
Gma09g01413 234 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Gma09g01413 234 MobiDBLite consensus disorder prediction 15 31 - -
Gma09g01413 234 CDD AP2 65 123 IPR001471 GO:0003700|GO:0006355
Gma09g01413 234 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Gma09g01413 234 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01413 Gma-Chr9 38194831 38196070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01413 10 232 AP2-EREBP Transcription Factor Family AT5G51990 53.712 3.78e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma09g01413 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01413 - - gmx:547622 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01625 16 37197625 37198766 Gma09g01413 09 38194831 38196070 GST
Gma09g01413 09 38194831 38196070 Gma10g02266 10 50254896 50255869 PCT
Gma09g01413 09 38194831 38196070 Gma20g01450 20 41629902 41631058 PCT
Gma10g02266 10 50254896 50255869 Gma09g01413 09 38194831 38196070 PCT
Gma20g01450 20 41629902 41631058 Gma09g01413 09 38194831 38196070 PCT