Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01378 ATGGCAAAGCTGCCTGTGGAATACAACGGCGACTGCGCCACCACCGCCTCAGCATCCGCCTCCGCAGCCGCGGAGTCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAAACCTTTCAACTCGTCGACGACCAATCCATCGACGATGTTATTTCCTGGAACGACGACGGATCAACGTTTATCGTCTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTCAAACACAACAATTTCTCTAGCTTCGTTCGCCAGCTCAACACTTACGGATTCAGAAAAGTTGTACCTGATCGGTGGGAGTTCTCGAACGAGTATTTCCGCCGAGGCGAGAAGCGGCTTCTGTGCGAAATTCAGCGGCGGAAGATCTCCTCGCCGGCGTCGTCTCCGACGGCGCCGGCGACGGTTTCGGTCACTGCGCCGATGCCGTTGACTGCGATACCGATCATATCGCCGTCGAACTCCGGCGAGGAGCAGGTGACGTCGTCGAACTCATCGCCGGCGGAGCTTCTCGACGAGAACGAGCGACTGAGGAAAGAGAACGTTCAGTTAACGAAAGAGCTCGCGGAGATGAGATCGCTCTGCAACAATATTTATTCTCTCATGTCAAATTATGCAAACGCCAACGGAAAAGGAAACAGCAACGGCAGTTACAAAACTAAAGGCGGCGCCGGTGTCGCGCACGGAAGTTTAGAGTCCGGCATGACGGCGGTGAAGCTGCTGGATTTGATGCCGGTGATGCGAAGCTCCGATGAGGACGCGGCGGAGATGGCGCCGGAGGAGATGAATCCGAAGCTGTTTGGTGTGGCGATTGGAGCGAAGCGAGCGAGAGAGGGAGGAGGTGGTGGAGATTGTGGAGGTGGAGGAGAGGAAGATACGCTGCTGCGCCTGCATCACGCGGGTTCTGCGGACGTGAAATCTGAGCCGTTGGATTTCCAGAACCATCGCGAGAATCAGAAAACGCCGTGGTTGAGTCCGTGTTACAGGACAAATCAAAGAGTGTGCAACTGA 1017 0.5526 MAKLPVEYNGDCATTASASASAAAESQRSIPTPFLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEYFRRGEKRLLCEIQRRKISSPASSPTAPATVSVTAPMPLTAIPIISPSNSGEEQVTSSNSSPAELLDENERLRKENVQLTKELAEMRSLCNNIYSLMSNYANANGKGNSNGSYKTKGGAGVAHGSLESGMTAVKLLDLMPVMRSSDEDAAEMAPEEMNPKLFGVAIGAKRAREGGGGGDCGGGGEEDTLLRLHHAGSADVKSEPLDFQNHRENQKTPWLSPCYRTNQRVCN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01378 338 SUPERFAMILY "Winged helix" DNA-binding domain 31 123 IPR036390 -
Gma09g01378 338 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma09g01378 338 Gene3D - 26 124 IPR036388 -
Gma09g01378 338 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 322 IPR027725 -
Gma09g01378 338 Coils Coil 176 196 - -
Gma09g01378 338 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma09g01378 338 MobiDBLite consensus disorder prediction 152 172 - -
Gma09g01378 338 MobiDBLite consensus disorder prediction 152 175 - -
Gma09g01378 338 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma09g01378 338 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 14 322 - -
Gma09g01378 338 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma09g01378 338 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma09g01378 338 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01378 Gma-Chr9 37203141 37204726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01378 18 338 HSF AT5G62020 47.941 8.09e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma09g01378 HSF_DNA-bind 2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01378 K09419 - gmx:100817440 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01606 16 36911117 36913020 Gma09g01378 09 37203141 37204726 GST
Gma09g01378 09 37203141 37204726 Gma10g02251 10 50052063 50053362 PCT
Gma09g01378 09 37203141 37204726 Gma20g01468 20 41839727 41840714 PCT
Gma10g02251 10 50052063 50053362 Gma09g01378 09 37203141 37204726 PCT
Gma20g01468 20 41839727 41840714 Gma09g01378 09 37203141 37204726 PCT