Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01354 ATGAAATTAATTGTACTCTTCTTCCTCGTAGCATCATCATCATCATATTCATACGCTCAATCCCCTGCAGCACCAGCAGTGGCTCATGTCCCTTCCACCAGAGCAACGCTTCCCATGTTACTCGTGATCTTCCTCTTCGCCCTCCTCTTCACCGCATTCTGCTCCATCTTCATTCGCTACTGCTCCCACGAAGAACAACCCCACGCGCTTCCACAAGCCACGCGCGCCACGCCGCGCGGAGTCGACCCGCGCGTGCTCGCCACGTGTCCCGTCACGTCCTACTACGCAGTCAAAATGAAGACGCCGCAAAAGGCTGCGTTTCAGTGTGCGGTGTGTTTGGCGGAGTTCGACGACGCCGACGCGCTCCGCTTGCTACCCAAGTGCGGTCACGTGTTCCACGCGCACTGCATCGACGCGTGGCTCGCGGCGCACGTGACATGCCCCGTGTGCCGCGGCGAAGTGAGCGTGGAAATCGAGGGGGAGGCACGTGCGCGCCACGTGTTTGAAGAAAGTTCCGTGAGAGGCTTTGGGGTGCTTCTGAGGTCACATTCGACGGGTCACTCTTTGGAGAGGTTCACTCTGAGGATGCCCGAGGAAGTAATGAAGAAGATTCTGGAAGATAGTGAACGCGGGAATGTGACGAGGATGATGAAGCGTTCCGCGAGCTACGACGTCGTTTTGCGGAGCATGGAAGAAGGGGGTGAAGGTAGTAGTAATAGTGGTAGTAATAGTAAAGAGAAGAGTAGTACTAATAATAATAACCGGTGGGTTTTATCGATGACGCCTCCCTTTGTTTCTCGCGCCGTTCGGGGATTCCGAGAGTGTCAAGAGAGAACGGTTTTCCATTGTGAAGTTTGA 858 0.549 MKLIVLFFLVASSSSYSYAQSPAAPAVAHVPSTRATLPMLLVIFLFALLFTAFCSIFIRYCSHEEQPHALPQATRATPRGVDPRVLATCPVTSYYAVKMKTPQKAAFQCAVCLAEFDDADALRLLPKCGHVFHAHCIDAWLAAHVTCPVCRGEVSVEIEGEARARHVFEESSVRGFGVLLRSHSTGHSLERFTLRMPEEVMKKILEDSERGNVTRMMKRSASYDVVLRSMEEGGEGSSNSGSNSKEKSSTNNNNRWVLSMTPPFVSRAVRGFRECQERTVFHCEV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01354 285 MobiDBLite consensus disorder prediction 231 257 - -
Gma09g01354 285 SMART ring_2 109 150 IPR001841 -
Gma09g01354 285 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Gma09g01354 285 PANTHER RING FINGER DOMAIN-CONTAINING 3 154 - -
Gma09g01354 285 MobiDBLite consensus disorder prediction 233 257 - -
Gma09g01354 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 159 IPR013083 -
Gma09g01354 285 CDD RING-H2_EL5_like 108 151 - -
Gma09g01354 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 3 154 - -
Gma09g01354 285 SUPERFAMILY RING/U-box 103 157 - -
Gma09g01354 285 SMART FANCL_C_2 105 159 - -
Gma09g01354 285 Pfam Ring finger domain 108 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01354 Gma-Chr9 36517956 36519052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01354 3 268 Rapid Response to Elicitors AT3G05200 34.796 5.94e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01354 K10664 - gmx:102665105 508.449