Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01309 ATGTCAGAGTCCAAGGATGAAAATCCTGACCTTCCTCCCAAGTCAAAGCCACAGGAGGAACATGGTTTTGCCATGGATTTTGACATTAGCCTGGAAAGTCTATGGCCCTCGGATCATATATCTTTGGTCTCTAACCCCATGTCTCCTTTTCTCTTTTCCACTATCTCTGACCAACCTTGTTCTCCTGTCTGGGCTTTTTCTGATGCCGAAGATGAGAGGCTAATCAGGATTGCAGCTTCAGCAGGTAATACAAATACAACAACTGAAAATCTAGTTGAAAATTATGACAACAAAAAAACTGTGCCACCCCTTGTAGCCATCCCAACTTCAGAAAATCCAGATGCTTATTGTCTAATCAAGGAAAGAATGACACAAGCGCTTCGCCACTTCAAAGAGTTGACTGAACAAAATGTTCTAGCTCAGGTTTGGGCACCTATGAGGAATGGAAATCGGTATGCACTTACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACAGTTTCCCTGATGTATATGTTCTCTGTGGATGGGGAGAATGATGAGATCATGGGACTTCCCGGCCGAGTTTTTCAGCAAAAAATTCCAGAATGGACTCCCAATGTTCAGTTTTATTCTAGTAAAGAGTATCAGCGCCTAAATCACGCGCAACATTACAATGTCCGCGGAACCTTGGCCCTGCCTGTGTTTGAGCTTGCAGGACAGTCATGTGTGGCTGTAGTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGCGGTTAAGTTGAGGAGTTCAGAAATTTTGGAGCATCAATACATTCAGATATGTAACGAAGACCGCCAGTATGCATTAGCCGAGATTTTGGAGATACTGACAGTTGTGTGTGAAACTCATAGTTTGCCTCTGGCACAAACATGGGTTCCATGTAAGCATCGGAGTGTCTTAGCACATGGCGGTGGTCATAAGAAAAGTTGCTCAAGTTTTGATGGATGTTGCATGGGGCAAGTTTGCATGTCTATAACTGAGGTAGCATTCTATGTAATAGATGCTCATACATGGGGTTTTCATGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGAGTTGCTGGGAGGGCATTTTTGTCCCACAACATGTGCTTCTGTGGAAACATCGCCCAATTCTGCAAAACTGAATATCCCTTAGTACATTATGCACTCATGTTTGGTTTAACCAGCTGTTTTGCAGTATGCTTACAAAGCTCTCATACCGGAAATGATGATTATGTGCTAGAGTTTTTTCTGCCTCCTGGGATCACAGACTTTAATGAACAAAAAAGATTGTTGGGATCCATATTGGCAACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCTTCTGGCATTGAACTTGAGGAAAATGCTTCAATTGAAATCATAGAAGCAAGAAATGAAAGAGTTAATTTGAGGTTTGAGTCCATTCCAATTACTCAATCTTCTAAGTCACCACCTAGACATGCCTCGCCAAATGTGGGGGAGGGGCTGCCACTGGAGCCATCAGAACAGAAAATAATGGCATACTTTGATGGTATAAATGATGGAGGGAGTCTTGGTGATAATGCAGGTGGACACATTGATCAGAACACTTCCTTAAAGATCAAAACCAAAAAGAAACCCTCAGAGAGAAAACGTGGAAAAGCTGAGAAATCAATTAGTCTTGATGTTTTGCAACATTACTTCACAGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCACGCTGGCCATCTCGAAAGATAAAAAAGGTTAACCGTTCCCTGTCCAAGCTCAAGTGTGTTATTGAATCAGTCCATGGTGCTGAACGAGCATTTGGTTTGAATTCTCTAAGTACCGTTTCACTTCCCATTGCTGCCGGTTCCTTTTCTGAGCCATCCACTTCAAACAAGTTCAACCGCCAAACATCATTGACCATTAGGCCATCGGAACCTAAGATCAATGAAAAGGATTTTGATGCGTCTGGAGCATCAGAAACAAAAAGGCAGGCTGCAATGGAAGATCAATTCCTTGGACTTGAAGCAAGGGCACAAAGTCCTGAGAAAGTGATTAATGATAGAGGAGTGGCCACTCAGGAGATTGGCACTAAAGGCACAAACAAGTTTAGAACTGGAAGTGGCTCAAGTGAAAGCAGTGGAAATCCTACTCCTCATGGTTCATGCCATGGTAGTCCCCCAAATGAAATCTCACCTCCTAAAGATATATTTGTAACAGGCCACAGTGAGAAATGTCTTGTGTTAAGAGGATCACTGGGGTCAACAACACTGCACTCAACTAGTACACCGAACTGCACAACTGCATACCCTATGCCTCACATTGTAGAAACGACAGAACCTCAAGAACTATTTGGAGGACAGCTACTTGAGCGTGCTGGTAGTTCTAAAGACTTGAGAAATCTATGCCCTTCAGCAGATGCTGTTTTGGAGGATCAGGTTCCAGAAGCTTACAAGATGAATCCTCAATGTTCTGACTTGCCTCAAATGCAACACATGGATAACCTTAATAACACTCTGACACCTTTTGCAGTTAGGAAAGAGGTGAAGAGTGTGACTATTAAGGCAACATATAAAGAAGATATCATAAGGTTTAAGGTCTCTATGGACTGTGGTATTGTGGAACTGAAAGAGGAAATTGCCAAAAGATTGAAACTAGAGGCGGGAACATTTGATATCAAGTATCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGACATCTCAAGATCATCAGGCAGCAACGTAATCAGGCTTGTGGTGCATGATATACTGCCCATTCTCGGAAGCTCTTGTGAGAGCTCAGGAGATTGGAAAGGTTGTATATAG 2973 0.4282 MSESKDENPDLPPKSKPQEEHGFAMDFDISLESLWPSDHISLVSNPMSPFLFSTISDQPCSPVWAFSDAEDERLIRIAASAGNTNTTTENLVENYDNKKTVPPLVAIPTSENPDAYCLIKERMTQALRHFKELTEQNVLAQVWAPMRNGNRYALTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEIMGLPGRVFQQKIPEWTPNVQFYSSKEYQRLNHAQHYNVRGTLALPVFELAGQSCVAVVELIMTSQKINYAPEVDKICKALEAVKLRSSEILEHQYIQICNEDRQYALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGHKKSCSSFDGCCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNIAQFCKTEYPLVHYALMFGLTSCFAVCLQSSHTGNDDYVLEFFLPPGITDFNEQKRLLGSILATMKPHFQSLKIASGIELEENASIEIIEARNERVNLRFESIPITQSSKSPPRHASPNVGEGLPLEPSEQKIMAYFDGINDGGSLGDNAGGHIDQNTSLKIKTKKKPSERKRGKAEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAERAFGLNSLSTVSLPIAAGSFSEPSTSNKFNRQTSLTIRPSEPKINEKDFDASGASETKRQAAMEDQFLGLEARAQSPEKVINDRGVATQEIGTKGTNKFRTGSGSSESSGNPTPHGSCHGSPPNEISPPKDIFVTGHSEKCLVLRGSLGSTTLHSTSTPNCTTAYPMPHIVETTEPQELFGGQLLERAGSSKDLRNLCPSADAVLEDQVPEAYKMNPQCSDLPQMQHMDNLNNTLTPFAVRKEVKSVTIKATYKEDIIRFKVSMDCGIVELKEEIAKRLKLEAGTFDIKYLDDDHEWVLIACDADLQECMDISRSSGSNVIRLVVHDILPILGSSCESSGDWKGCI 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01309 990 MobiDBLite consensus disorder prediction 717 776 - -
Gma09g01309 990 MobiDBLite consensus disorder prediction 1 20 - -
Gma09g01309 990 ProSiteProfiles PB1 domain profile. 890 972 IPR000270 GO:0005515
Gma09g01309 990 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 985 - -
Gma09g01309 990 MobiDBLite consensus disorder prediction 665 684 - -
Gma09g01309 990 Pfam PB1 domain 891 971 IPR000270 GO:0005515
Gma09g01309 990 ProSiteProfiles RWP-RK domain profile. 563 646 IPR003035 -
Gma09g01309 990 SMART PB1_new 890 972 IPR000270 GO:0005515
Gma09g01309 990 MobiDBLite consensus disorder prediction 665 703 - -
Gma09g01309 990 MobiDBLite consensus disorder prediction 733 764 - -
Gma09g01309 990 MobiDBLite consensus disorder prediction 546 576 - -
Gma09g01309 990 Pfam RWP-RK domain 579 626 IPR003035 -
Gma09g01309 990 SUPERFAMILY CAD & PB1 domains 890 975 - -
Gma09g01309 990 MobiDBLite consensus disorder prediction 503 524 - -
Gma09g01309 990 CDD PB1_NLP 891 971 IPR034891 -
Gma09g01309 990 Gene3D - 887 974 - -
Gma09g01309 990 PANTHER PROTEIN NLP8 3 985 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01309 Gma-Chr9 35410766 35415255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01309 253 985 NLP Transcription Factor Family AT4G24020 51.617 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma09g01309 PB1 2.7e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01309 - - gmx:100780901 1995.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01571 16 36129336 36133695 Gma09g01309 09 35410766 35415255 GST
Gma09g01309 09 35410766 35415255 Gma10g02222 10 49751907 49756953 PCT
Gma09g01309 09 35410766 35415255 Gma20g01498 20 42100601 42105526 PCT
Gma10g02222 10 49751907 49756953 Gma09g01309 09 35410766 35415255 PCT
Gma20g01498 20 42100601 42105526 Gma09g01309 09 35410766 35415255 PCT