Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01180 ATGCTTCTTGGGCATGATGATGGATATGTGAGAGACCAAAACATGAAGGTTACCATTGTGTACAACCATTTTGGACCTAATTGCAATCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTGGCCAACAATCTTTACCAGGGATGGGTGCAATATGCAATTGGGGGAAGCATGGAACCTAGCCTCAAAAGCGAAGCTAACCTCTTCATAGCACCAATAACAAGGAGTAAGGAGGTGACATGGAGAAAGGGTAGCCATAAAAATGGGGATAGATGGGAATTTCATTTAGTGAGGGATGCTTTTGAAAATGGAGCCTCTTTTGCAGTAACAAAAGGAAGACGTGTGCCAAAACCAAATTATAGCAAGGAACAAAGGTTTAAAGTTTTTGATTCCAAATATGTGAGATCATTGACGCGTTCATCAGATGTGTTACCATGCAATAAAACCTCTAAATATTGA 462 0.4091 MLLGHDDGYVRDQNMKVTIVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPITRSKEVTWRKGSHKNGDRWEFHLVRDAFENGASFAVTKGRRVPKPNYSKEQRFKVFDSKYVRSLTRSSDVLPCNKTSKY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01180 153 PANTHER PECTATE LYASE 1 150 - -
Gma09g01180 153 Gene3D - 1 146 IPR012334 -
Gma09g01180 153 Pfam Pectate lyase 1 70 IPR002022 -
Gma09g01180 153 PRINTS Pollen allergen Amb family signature 31 50 IPR018082 -
Gma09g01180 153 PRINTS Pollen allergen Amb family signature 53 72 IPR018082 -
Gma09g01180 153 PRINTS Pollen allergen Amb family signature 93 117 IPR018082 -
Gma09g01180 153 PRINTS Pollen allergen Amb family signature 124 147 IPR018082 -
Gma09g01180 153 PANTHER PECTATE LYASE 18-RELATED 1 150 IPR045032 GO:0030570
Gma09g01180 153 SUPERFAMILY Pectin lyase-like 1 144 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01180 Gma-Chr9 31745584 31746250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01180 1 85 Polysaccharide Lyase AT5G09280 74.118 7.77e-45 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01180 K01728 - gmx:102664202 324.324