Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01142 ATGTTGGCCTCCACTATCCTAACGCCCTCGAAGCTCGTCCCACCCATCACCGTCGTTGTCGCCGCAGAAACTCACCCGAGAAACAGAGTCGCACTCTTTCCGAAATCCAACTCCAAACTCGCTTTCGTTGCCAGGGCCAGTGGTAACGCCCGTGATGGCACCGTTGACGCCACCTCTGCCCCGGAAATTGATGCAGTTACAAGTTCATCTTCTGGCCTTGGTGATGGTTATGTAGCCTTGTTCGTTCGTATGTTAGGCCTTGATCGTGATCCTCTGGATAGAGAACAAGCTATAGTTGCTCTCTGGAAATATTCGCTTGGTGGAAAGAAGTGTATAGACACTTTAATGCAGTTTCCTGGTTGTATTAATCTTGTTGTGAACCTCCTCCGATCAGAGTCTAGTTCAGCATGTGAGGCAGCTGCGGGTCTTCTGCGATCACTATCTTCAGTCAATTTATATAGAAATTCTGTAGCTGATAGTGGAGCAATAGAAGAGATAAACAGATTGCTGAGGCAATCTTCCTTGGCTCCTGAGGTAAAGGAGCAGAGTTTGAGTGCACTGTGGAATTTATCTGTTGATGAGAAGCTCTGCATTAAAATTTCAAAGACTGAGATTCTGCCATTAGCTATTAAGTACCTTGGCGACGAGGATATAAAGGTGAAGGAGGCTGCAGGGGGCATTTTGGCAAATTTAGCATTGAGCCGCGTTAACCACGACATCATGGTTGAAGCAGGTGTTATACCTAAATTGGCAAAGTTCTTAACATCTAATTTGGAAGGATCTAAAGTTATTAGGAAGGAAGCAAGGAATGCATTGCTGGAACTTGTTAAGGACAAGTATCATAGAATTCTTGTTATTGAGGAAGGTCTGGTCCCTGTGCCATTAATTGATGCTGCAGCCTTTAAGTCATTCACCCCGGGCTTACATCTGTGGCCCACGTTACCTGATGGTACAGAAATTGAAAGGACTTCTAGACTGCCATCCAGATATGGTGCTTCGGAATTACTTCTTGGATTAAATGTTGATGACAAGAATGCTAACTTAGAGGAAGCAAAAGTCAATGCAATTGTTGGACGAACACAACAGCAATTCCTTGCTCGTGTTGGGGCTTTAGAAATGGAAGAAAAGACTATGCCTCATTCTGAATGCTCAAATGATCTAAGGTTTACACTTTTACCATGGATGGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTGGAAGATAAGTCTGCAATAATTAAGGCTGCAGAGTCAATTGCTACTGCATGTATCAATGAACATATGCGTATTGCATTCAGGGAAGCTGGAGCAATTAAGCATTTAGTAAGGCTTTTAAATTGCGATGATAATGCAGTCCAGTTGGCAGCTACACAAGCTTTGGAAAGGCTGTCCGTTAGCAATATTGTTTGCCGGGTTATTGAAGCTGAGGGGGTTTTAGGTCCTTTAGTTAGTATTTTGAAATGCTCAGAGATAGCTGGAACTATTGTGGAAAAGTCTTTGAACATACTTGCTCGGATATTGGACCCCAGTAAAGAGATGCAATTAAAGTCTTATGATGGACCAGCTAATGAATCTGAAAAGGCATTTGGTGGAGCAAAAGGTGACTGTGTTTCAACCGGGTTTAGTAGCACTGAACAAACGGTATCACAAACATACACAAGGAATGATATACTGGATTCTGTTTTCATTGCGCACCTGGTTGAGATTCTGAAGTCCTTTCCTCCCAGTTTACAGGAAAAAGCTGCTACTGTGCTTGAGTTTGTGGCATTGACTGACCCAACTCTTGCCCCAATTATATCTTTGGATATTGAATCTGGTCTCAATTCTGCTTTTCAGCAAAAAATTTTGAAAATTTCAGCGGACATGGAATCTGACGTAGAAGATCAGTTTTCCGAAGCATATGCAATTGAATTTGAAGAAGCTGGTTTTGCAATATCTGCAGCATCCCGATTATTGACAAGGCTACTCGATTGTGAGCAATTCTGCCACAAAATAAACTCCTTGCAGTTCATTGATTTGCTTCGCGGAATCCTCAGGTCCAGCATTCCCCTTCACAATAAAGAGTGGGTAGCTGCTTGCCTAGTTAAACTAAGTTCTCTCTCTGGTTCCATTGCGAGCCTCTATCCAATCAATGTGGAAATTACACTCTACGAGACAATTCCAAGACTTCTGGAACAGATCAGAACTTCGTTCTCCCCAGAAGCACAGGAAACTGCTGTTGTTGAACTTAACAGAATAATATCTGAAGGAGTGGTAGATTCCACAGAAGCTATTATTTCTGATGAAGCAATATATTCATTGGTGAATTTGATAGAAGAAGGTAGTGATAGGGCTGTTGAAGCAAGCTTGGCAATACTGTATAATCTGAGTATGGACAGTGAGAACCATTCAGCACTTGTGGCTGCTGGAGCAGTGCAGGTCTTAAAAAGAATTGTTCTAGCTAATAGAACACACTGGGAACGAGCTCTTCTTTTACTCAGGACTTTGCAACCGTGA 2499 0.4258 MLASTILTPSKLVPPITVVVAAETHPRNRVALFPKSNSKLAFVARASGNARDGTVDATSAPEIDAVTSSSSGLGDGYVALFVRMLGLDRDPLDREQAIVALWKYSLGGKKCIDTLMQFPGCINLVVNLLRSESSSACEAAAGLLRSLSSVNLYRNSVADSGAIEEINRLLRQSSLAPEVKEQSLSALWNLSVDEKLCIKISKTEILPLAIKYLGDEDIKVKEAAGGILANLALSRVNHDIMVEAGVIPKLAKFLTSNLEGSKVIRKEARNALLELVKDKYHRILVIEEGLVPVPLIDAAAFKSFTPGLHLWPTLPDGTEIERTSRLPSRYGASELLLGLNVDDKNANLEEAKVNAIVGRTQQQFLARVGALEMEEKTMPHSECSNDLRFTLLPWMDGVARLVLILELEDKSAIIKAAESIATACINEHMRIAFREAGAIKHLVRLLNCDDNAVQLAATQALERLSVSNIVCRVIEAEGVLGPLVSILKCSEIAGTIVEKSLNILARILDPSKEMQLKSYDGPANESEKAFGGAKGDCVSTGFSSTEQTVSQTYTRNDILDSVFIAHLVEILKSFPPSLQEKAATVLEFVALTDPTLAPIISLDIESGLNSAFQQKILKISADMESDVEDQFSEAYAIEFEEAGFAISAASRLLTRLLDCEQFCHKINSLQFIDLLRGILRSSIPLHNKEWVAACLVKLSSLSGSIASLYPINVEITLYETIPRLLEQIRTSFSPEAQETAVVELNRIISEGVVDSTEAIISDEAIYSLVNLIEEGSDRAVEASLAILYNLSMDSENHSALVAAGAVQVLKRIVLANRTHWERALLLLRTLQP 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01142 832 SUPERFAMILY ARM repeat 394 811 IPR016024 -
Gma09g01142 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 468 IPR000225 GO:0005515
Gma09g01142 832 SMART arm_5 150 192 IPR000225 GO:0005515
Gma09g01142 832 SMART arm_5 193 233 IPR000225 GO:0005515
Gma09g01142 832 SMART arm_5 234 277 IPR000225 GO:0005515
Gma09g01142 832 SMART arm_5 550 591 IPR000225 GO:0005515
Gma09g01142 832 SMART arm_5 108 149 IPR000225 GO:0005515
Gma09g01142 832 SMART arm_5 752 792 IPR000225 GO:0005515
Gma09g01142 832 SMART arm_5 426 466 IPR000225 GO:0005515
Gma09g01142 832 Gene3D - 74 303 IPR011989 -
Gma09g01142 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 194 IPR000225 GO:0005515
Gma09g01142 832 Gene3D - 641 830 IPR011989 -
Gma09g01142 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 763 805 IPR000225 GO:0005515
Gma09g01142 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 120 162 IPR000225 GO:0005515
Gma09g01142 832 Gene3D - 390 608 IPR011989 -
Gma09g01142 832 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 831 - -
Gma09g01142 832 SUPERFAMILY ARM repeat 76 491 IPR016024 -
Gma09g01142 832 Pfam Armadillo/beta-catenin-like repeat 426 465 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01142 Gma-Chr9 30336230 30343649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01142 120 293 U-box Gene Family AT2G23140 29.310 9.59e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01142 - - gmx:100793128 1568.13