Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01110 ATGCTAACAACAGAATATTTGCTGAAGCTTCCAAAAAAATTCACTCGAAAATACGGGGATGGCATGTCAAACCCGGTGTTTCTCAAGCCTGCAGATGGCACTGAATGGAAAATACATTATACCAAGCATGGTGGTGAGATTTGGTTTCAAAAGGGTTGGAAAGAGTTTGCAACATACTATTCTCTAGATCATGGTCACTTGCTGTTCTTTGAATATGAAGGAACTTCTCATTTTGATGTGCACATATTTGACAGTAGTGCCCTTGAAATAGACTATCCTTCCCATGGTACTCATGAGGGAAAGGACAATCTTGTGGAGATCAGTGATGATTCGGTGGAAATTTTGGGTGAGCAATTTTCCTGCCAAAACACTAGAGGGTCATCTCCTCAACCTTGTAAGAAAATGAAAAATAGCATAACTACAAATGTCGAAAGAAGCCCCAATGTGGTAAACTTGCATCAGCATGTCCCAACTATAAGTAATAGCTCTCAAAAGGCAACATTCATGAAGCAAATGTTAGATGAAGATGATGGCATAGGCATTTTTAACACCGAATACCCAAAAGTAGAGCAGTCAACTTCTACGGCTTTAAAAAAAGCCTCAACATTCAGATCTGAACATCCCTTCTTCAGGCTTGTCATGAAGCCATCCTTTATTAATGGATATTACCTGGAAATACCACCTCAATTTGCCGAAAGATATTTGAAGAAAACACATGCAATTGTCATCCTTGAGATTTTGGATGGGAGAACTTGGTCTGTTATTTGTTCTGCAACTAGACTTACTGAGGGATGGCAGAAATTTGCATCAGAAAATAATTTGAATGTGGGGGATGTTTGTGTTTTTGAACTGATCCAGAAGATCCAGGGCCTTTGTTTTAAGGTTTCCATCTATCAAGGTGCTGAAGAACCAATTTGCCCCATTTCACAAGGTGGAACTTCAAGTCAAAGATCTTCACAGGTGAAAAGCCGCTCCAAGTTGAAGATCTTAACAATCAGATACATAGCACTAAAAAGAGCTAGCAAATTCACATCAGAAAATCCCTTTTTCATGGTCACTTTAACTACAAAATTAAAGTCAATTATAACCAGAGACGTGCATGTGCCGATGGACTTTGTCAGAAAGCATTTAGTAAACGTGAAGCAGAAGTTGATGATGATACACTTTAGAAAGAAATTGTGGCCGGTAAGGTTTGTCGTCCGTGAAAGTTCTACTGTTTCAGGCAATCTCTCTACTGGTTGGGCCTGGTTTGTAAGAGAAAATGAACTGCAACGTGGAGATGTGTGTATCTTTGAGCTTTTCAACAGAGAAGATGCAACATTTGATGCTCATGTTTTCAGAGGACACCGTGAG 1353 0.3947 MLTTEYLLKLPKKFTRKYGDGMSNPVFLKPADGTEWKIHYTKHGGEIWFQKGWKEFATYYSLDHGHLLFFEYEGTSHFDVHIFDSSALEIDYPSHGTHEGKDNLVEISDDSVEILGEQFSCQNTRGSSPQPCKKMKNSITTNVERSPNVVNLHQHVPTISNSSQKATFMKQMLDEDDGIGIFNTEYPKVEQSTSTALKKASTFRSEHPFFRLVMKPSFINGYYLEIPPQFAERYLKKTHAIVILEILDGRTWSVICSATRLTEGWQKFASENNLNVGDVCVFELIQKIQGLCFKVSIYQGAEEPICPISQGGTSSQRSSQVKSRSKLKILTIRYIALKRASKFTSENPFFMVTLTTKLKSIITRDVHVPMDFVRKHLVNVKQKLMMIHFRKKLWPVRFVVRESSTVSGNLSTGWAWFVRENELQRGDVCIFELFNREDATFDAHVFRGHRE 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01110 451 PANTHER B3 DOMAIN-CONTAINING 323 447 - -
Gma09g01110 451 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
Gma09g01110 451 PANTHER B3 DOMAIN-CONTAINING 8 299 - -
Gma09g01110 451 SUPERFAMILY DNA-binding pseudobarrel domain 6 86 IPR015300 -
Gma09g01110 451 CDD B3_DNA 8 84 IPR003340 GO:0003677
Gma09g01110 451 CDD B3_DNA 348 447 IPR003340 GO:0003677
Gma09g01110 451 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 323 447 - -
Gma09g01110 451 Gene3D - 2 87 IPR015300 -
Gma09g01110 451 SUPERFAMILY DNA-binding pseudobarrel domain 343 447 IPR015300 -
Gma09g01110 451 ProSiteProfiles B3 DNA-binding domain profile. 351 449 IPR003340 GO:0003677
Gma09g01110 451 SMART B3_2 209 301 IPR003340 GO:0003677
Gma09g01110 451 SMART B3_2 2 86 IPR003340 GO:0003677
Gma09g01110 451 SMART B3_2 353 447 IPR003340 GO:0003677
Gma09g01110 451 SUPERFAMILY DNA-binding pseudobarrel domain 204 298 IPR015300 -
Gma09g01110 451 Pfam B3 DNA binding domain 8 85 IPR003340 GO:0003677
Gma09g01110 451 Pfam B3 DNA binding domain 357 447 IPR003340 GO:0003677
Gma09g01110 451 Pfam B3 DNA binding domain 209 296 IPR003340 GO:0003677
Gma09g01110 451 Gene3D - 333 449 IPR015300 -
Gma09g01110 451 Gene3D - 189 302 IPR015300 -
Gma09g01110 451 ProSiteProfiles B3 DNA-binding domain profile. 209 301 IPR003340 GO:0003677
Gma09g01110 451 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 299 - -
Gma09g01110 451 CDD B3_DNA 208 298 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01110 Gma-Chr9 28661215 28663546 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01110 333 447 B3 DNA Binding Superfamily AT3G18990 32.479 2.69e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma09g01110 B3 6.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01110 - - gmx:100818507 623.239