Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01108 ATGGACAATAATAATATCCTGGGTCTTCTCAAGCTTCGAATTAAAAGAGGCGTTAATCTTGCAATTCGCGATGCTCGTACCAGCGATCCGTATGTCGTCGTCAACATGGGTGATCAGAAGCTGAAGACTCGTGTCGTAAAAAACAACTGCAACCCTGACTGGAATGAAGAATTGACCCTTTCTGTAAAGGACGTTAAAACCCCAATACATCTGACGGTTTATGACAAAGACACTTTCTCTGTTGATGACAAAATGGGTGAGGCAGAGATAGACTTAAAACCATATGTTCAGTGTAAGCAGATGGGATTGGGCAAGCTCCCAAATGGTTGTTCACTCAAGAGAATTCAACCAGATAGAACTAATTACCTTGCTGAAGAGAGCAGCTGCATTTGGCAAAATGGAAAGATTGTCCAAGAAATGTTTTTGAGATTGAGAAATGTTGAGAGTGGAGAAATACTTGTGGAAATTGAGTGGGTTGATGTTGTTGGTTGCAAGGGCTTATCAGAGGCAAAATAA 516 0.4109 MDNNNILGLLKLRIKRGVNLAIRDARTSDPYVVVNMGDQKLKTRVVKNNCNPDWNEELTLSVKDVKTPIHLTVYDKDTFSVDDKMGEAEIDLKPYVQCKQMGLGKLPNGCSLKRIQPDRTNYLAEESSCIWQNGKIVQEMFLRLRNVESGEILVEIEWVDVVGCKGLSEAK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01108 171 CDD C2_ArfGAP 7 150 - -
Gma09g01108 171 SMART C2_3c 9 104 IPR000008 -
Gma09g01108 171 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Gma09g01108 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 165 IPR044562 -
Gma09g01108 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 5 165 - -
Gma09g01108 171 Gene3D C2 domain 4 165 IPR035892 -
Gma09g01108 171 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 159 IPR035892 -
Gma09g01108 171 Pfam C2 domain 9 94 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01108 Gma-Chr9 28508826 28518267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01108 40 168 C2H2 Transcription Factor Family AT1G70790 66.412 7.25e-60 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01108 - - gmx:100788395 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00918 07 10086115 10088104 Gma09g01108 09 28508826 28518267 GST
Gma08g00522 08 4294156 4295586 Gma09g01108 09 28508826 28518267 PCT
Gma09g01108 09 28508826 28518267 Gma08g00522 08 4294156 4295586 PCT