Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01093 ATGGCGACGGCTGGTGGTGGCGGTGGTGGTGGCTGCGTGGCCGTAATGGCAGGCAGTTGTACTGTCTCCACTCCGTCGTCGAGTTACGGAGGCGGCGCGTGTTCTTCCAATTCCAAAGACACTCTCATCGAATCGCCGATTTTGATATTCTGTTTATTCCACAAAGCTATTAGCTCGGAGCTCCAGTCCCTCCACGCAACCGCCTTCGATTTCGTTTCCAACCGCCGCCATTCACAACCACACTCTCCCCTCAAAATCATGTCCTTCTCCCATCGCTGCCACTTCCTTCGCACTCTCTACAAGCACCACTGCAATGCTGAGGACCAGGTCATATTTCCTGCCTTAGATAAACGAGTGAAGAATGTTGCACACACCTATTTTTTGGAACATGAGGGAGAGGGTCTTCTTTTTGATCAATTGTTTAAGTTGCCAAATTCCAATTTGCTAAATGAAGAGAGCTATGGAAGAGAATTAGCTTCTTGCATTGGAGCCCTTCGAACATCAATTTGCCAGCATATGTTTAAGGAAAAGGAACAGGTCTTCCCTTTGGTTATTGAGAAATTTTCATCTGAAGAGCAGGGGTCATTGGTATGGCAATTTCTTTGTAGCATACCGGTCAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTCATATATATCATCTGATGAGTATCAAGGTCTGCTTAGTTGCTTGTGCACAATAATTCCCAAAGAGAAGCTTCTTCATCAGGTCATCTTTGGATGGATGGAAGGACTAAAGATAAAACATAGAAAGTGCACGCATGATACCAAGGTTCAATGGAAGGATGTTGGTATGAGCAACTTACTCAGTCATAATGAAAAGGTGTATTCTATTTGTGGATCTTCCAAAACTGTCAAAAGGAAAAGGGTGGGGCTAAATGAAGATCCTACTAATTCAAATATATCATGCCCTTTAGATGAATTGTTACTTTGGCACAAGGCTATAAAGCAAGAATTGAGTGATTTAGCTGAGACAGCTAGAAAGATACAGCTATCTGAAGAATTTTCTAATTTGTCATCATTTAGTGGGAGGCTGCAATTTATAACTGAAGTCTGCATCTCCCATAGCATTGCTGAGGACAGAGTAATATTCCCTGCTATAAAAGCAGAGCTGCATTTTCTCCAAGACCACACAGATGAAGAACTCCAATTTGACAAGCTTAGGTGTCTGATAGATAGTATCCAAAGTGCTGGAGCTGACTCATCATCTGCTGAATTTTATTTTAAGTTGAGCTCCCATACCGAACAAATCACAGATACTATATTGAAGCACTTTGAAGACGAGGAAGCTCAGGTTCTTCCACTGGCACGAAAATTATTTAGTCCCCAAAGGCAACGAGAATTACTTTATGAAAGCTTGTGCTCAATGCCCTTGAAATTGATTGAGTGCGTGTTACCATGGCTGGTTGGATCACTTAATCAAACTGAAGTTAGATCATTTCTTCAGAATATGTATATGGCAGCCCCAGCTACGGATCATGCATTGGTTACCCTTTTCTCTGGTTGGGCATGCAATGGATATTCTAGGAACAGTTGCTTCTATTCAAGCACAACAGGTTTATGTCCTGATAGGAGATTGATGGAAATACCATTTTGCATGTGTGAACCTTCATTCGGTCTCAATGAAAAATCTTCAGCCATTCAACAAGAAGATGAAAATGGCTGTATTGGACCAGTCAAGCATGGAAAGCCTGAATCAAAGCAAGACAATGATGTTGCTAACCTGATGGTAACTGGAAAAACCCTCAGCTCATCTCTTAATCAGTCTTGCTGTGTCCCTGAATTAAGGGTGAATGCAAGTAATCTAGGGCTTGGTTCTTTGGCCTTAACAAAGTCTCTGCGAGAACTATCTGATTACCCATCTGCACCTTCCCTCAATTCCAGTCTTTTTATGTGGGAAACCAATTTAGTCTCGGCTGACAATCAATGCATTGCACGGCCTATTGATAACATATTTAAATTTCACAAAGCCATACGGAAAGACTTGGAGTATTTAGATGTTGAATCTGTAAAACTCAATGATTGTGATGAAATTTTCATTCAGCAATTCACTGGTAGATTTTGCTTGTTGTGGGGTTTGTATAGAGCTCATAGTAACGCTGAGGATGATATAGTATTTCCAGCATTAGAATCAAAAGATAATCTTCACAATGTGAGCCATTCTTACACTTTGGATCACCAGCAGGAAGAGAAGTTGTTTTTAGATATCTCTTCTGGACTCACTCAGCTTACTCAATTACATGAATTGCTATATAAAAAGAATTGGTCTGATCATATAACTAATTGTTTCTCTAATTATGCTGGTTGCTATGATATTGATACTGTACAAAATTACAACGAGCTCTCTACAAAGATTCAGGGCATGTGCAAATCTATCAGAGTGACACTAGATCAACATATTCTCAGGGAGGAACTTGAGTTATGGCCATTGTTTGATAGACACTTTTCTCTGGAAGAACAGGATAAAATTGTTGGTCATATAATTGGTACTACAGGGGCAGAGGTTCTCCAGTCAATGCTGCCATGGGTAACTTCTGCTCTCGCACAAGACGAGCAAAACAAAATGATAGATACATTGAAACAGGCTACCAAAAACACTATGTTCTGTGAGTGGCTTAATGAATGGTGGAAAGGACCTGCTTCATCTTTAAATATCACTACACCAGGAGATTACTCACTAGGTACTGATGCATATGAAGATTCAGAGCATAGCTTTCTTGCATTCCGACCTGGATGGAAAGATATATTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAAGTTTCTCAAGATTCAACTCTTGATCCAAGAAGAAAAGCATATCTTATTCAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTCGTCTCAATCATTGGGAGTTGAATCTTCAAAAGGAGATATATTGGAAACTTCACTTTCGTTTCATGATCCAGAGAAAAAAATATTTGGATGTGAGCATTACAAAAGAAATTGTAAACTCCGTGCTGCTTGCTGTGGAAAACTATTCACGTGTCAGTTCTGTCACGACAAAGTTAGTGACCATTTGATGGATAGGAAGGCTACAACTGAGATGATGTGCATGCAGTGCCAGAAAATACAGCCTGCTGGACCAGTTTGTGCAACACCTTCCTGTGGCAGTCTCTTGATGGCAAAGTACTACTGTAGTATTTGCAAACTTTTTGATGATGAAAGGACTGTTTATCATTGCCCTTTCTGCAATCTATGCCGTCTGGGAAAGGGACTTGGTGTTGACTTCTTTCACTGCATGCAGTGTAATTGTTGCATGTCAAAGAAATTGGTTGATCACATATGCCGGGAAAAGGGTTTAGAAACAAACTGCCCCATCTGCTGTGATTTTTTGTTCACATCCAGTGAATCTGTCAGAGCTCTCCCTTGTGGACATTTCATGCATTCTGCTTGTTTTCAGGCATACACATGTAGCCACTACATCTGTCCAATTTGTAGCAAATCTATGGGAGATATGTCGGTTTACTTTGGCATGCTTGATGCTCTACTGGCTTCTGAGGAACTCCCAGAAGAATATCGGAATCAATGTCAGGATATACTTTGCAATGACTGCCATGAGAAGGGTACTGCACCATTTCATTGGCTATACCACAAGTGTGGGTTTTGCGGATCTTACAACACAAGGGTAATTTGA 3702 0.4082 MATAGGGGGGGCVAVMAGSCTVSTPSSSYGGGACSSNSKDTLIESPILIFCLFHKAISSELQSLHATAFDFVSNRRHSQPHSPLKIMSFSHRCHFLRTLYKHHCNAEDQVIFPALDKRVKNVAHTYFLEHEGEGLLFDQLFKLPNSNLLNEESYGRELASCIGALRTSICQHMFKEKEQVFPLVIEKFSSEEQGSLVWQFLCSIPVKMMAEFLPWLASYISSDEYQGLLSCLCTIIPKEKLLHQVIFGWMEGLKIKHRKCTHDTKVQWKDVGMSNLLSHNEKVYSICGSSKTVKRKRVGLNEDPTNSNISCPLDELLLWHKAIKQELSDLAETARKIQLSEEFSNLSSFSGRLQFITEVCISHSIAEDRVIFPAIKAELHFLQDHTDEELQFDKLRCLIDSIQSAGADSSSAEFYFKLSSHTEQITDTILKHFEDEEAQVLPLARKLFSPQRQRELLYESLCSMPLKLIECVLPWLVGSLNQTEVRSFLQNMYMAAPATDHALVTLFSGWACNGYSRNSCFYSSTTGLCPDRRLMEIPFCMCEPSFGLNEKSSAIQQEDENGCIGPVKHGKPESKQDNDVANLMVTGKTLSSSLNQSCCVPELRVNASNLGLGSLALTKSLRELSDYPSAPSLNSSLFMWETNLVSADNQCIARPIDNIFKFHKAIRKDLEYLDVESVKLNDCDEIFIQQFTGRFCLLWGLYRAHSNAEDDIVFPALESKDNLHNVSHSYTLDHQQEEKLFLDISSGLTQLTQLHELLYKKNWSDHITNCFSNYAGCYDIDTVQNYNELSTKIQGMCKSIRVTLDQHILREELELWPLFDRHFSLEEQDKIVGHIIGTTGAEVLQSMLPWVTSALAQDEQNKMIDTLKQATKNTMFCEWLNEWWKGPASSLNITTPGDYSLGTDAYEDSEHSFLAFRPGWKDIFRMNQNELESEIRKVSQDSTLDPRRKAYLIQNLMTSRWIASQQKSSQSLGVESSKGDILETSLSFHDPEKKIFGCEHYKRNCKLRAACCGKLFTCQFCHDKVSDHLMDRKATTEMMCMQCQKIQPAGPVCATPSCGSLLMAKYYCSICKLFDDERTVYHCPFCNLCRLGKGLGVDFFHCMQCNCCMSKKLVDHICREKGLETNCPICCDFLFTSSESVRALPCGHFMHSACFQAYTCSHYICPICSKSMGDMSVYFGMLDALLASEELPEEYRNQCQDILCNDCHEKGTAPFHWLYHKCGFCGSYNTRVI 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01093 1233 Pfam Hemerythrin HHE cation binding domain 312 444 IPR012312 -
Gma09g01093 1233 Pfam Hemerythrin HHE cation binding domain 655 818 IPR012312 -
Gma09g01093 1233 Pfam Hemerythrin HHE cation binding domain 54 184 IPR012312 -
Gma09g01093 1233 Pfam Zinc-ribbon 1174 1231 IPR039512 -
Gma09g01093 1233 Pfam CHY zinc finger 998 1073 IPR008913 GO:0008270
Gma09g01093 1233 ProSiteProfiles Zinc finger CTCHY-type profile. 1063 1126 IPR017921 -
Gma09g01093 1233 ProSiteProfiles Zinc finger CHY-type profile. 991 1060 IPR008913 GO:0008270
Gma09g01093 1233 SMART ring_2 1127 1168 IPR001841 -
Gma09g01093 1233 CDD Hr-like 659 817 - -
Gma09g01093 1233 CDD Hr-like 52 182 - -
Gma09g01093 1233 Gene3D nmb1532 protein domain like 45 202 - -
Gma09g01093 1233 Gene3D nmb1532 protein domain like 316 459 - -
Gma09g01093 1233 ProSiteProfiles Zinc finger RING-type profile. 1127 1169 IPR001841 -
Gma09g01093 1233 Gene3D nmb1532 protein domain like 653 878 - -
Gma09g01093 1233 CDD RING-H2_Pirh2 1126 1169 - -
Gma09g01093 1233 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 39 1233 - -
Gma09g01093 1233 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 39 1233 - -
Gma09g01093 1233 SUPERFAMILY Zinc hairpin stack 1064 1119 IPR037275 -
Gma09g01093 1233 Pfam Ring finger domain 1126 1168 IPR001841 -
Gma09g01093 1233 SUPERFAMILY RING/U-box 1126 1175 - -
Gma09g01093 1233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1122 1171 IPR013083 -
Gma09g01093 1233 SUPERFAMILY CHY zinc finger-like 990 1054 IPR037274 GO:0008270
Gma09g01093 1233 Gene3D - 1197 1233 - -
Gma09g01093 1233 CDD Hr-like 314 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01093 Gma-Chr9 26097607 26109471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01093 3 1233 C2H2 Transcription Factor Family AT3G18290 58.711 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01093 K16276 - gmx:100783072 2541.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma07g00851 07 9029830 9039647 Gma09g01093 09 26097607 26109471 GST