Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01091 ATGACTTCCGCATGCAATAAGAATCCCAAGCCCATTGCGGTTCGTTTCTTTAAAAACATCTTCAGAGCAAGTCTTGCACATGGATTACTTAAGCTCCCAACAATTTTCACTAAAAAATACGGAGATGGAATGTCAAACCCTGTGTCTCTAAAGTCCCCAGATAGTACTAGATGGAAAATATATTGGACCAAGCATGATGGTGAGATTTGGTTTCAAAAGGGTTGGAAGGAGTATGCCACATACTATGGTCTAGATCATGGTCACCTGCTGTTCTTTGAATATGAGGGAACTTCTCATTTTAATGTGCACATATTCGACACCAGTGCCGTTGAAATAGACTATCCTTCCAATGGTACTCATCATGGAAAGGACAGCAGCCATGTCGAGATTAGCGACGATCCTGTTGAAATTTTGGATGAGAAATTTTCATGCCAAAAGACTAGAGAGAAATCCACAGTGTCTTCTCCTCAACCTACCAAGAAAATGAAGGCTGGACTAACTACAAATGTTAAAAAAAGGCCCAATGTGGTGAACTTGCATCGGCATGTCCAAATTAGAAGCATTAAATCTCAAAAGGCAAAATTTGTCAAGCATGAATTAGATGAAGATGAAAGTAGAGGCATTTTTCACACTGAACGGCCAAAAGGGGAGCAATTAACTTCTACAGCTTTAAACAGAGCCACAGCTTTCAGATCTGAAAATCCCTCTTTCAAGCTTGTCATGAATCCATCCTTTATTTATGGAGACTACCTGGAAATACCACCTGAATTTGCAGAAATATATTTGAAGAAGACACATGCAGTTGTCATCCTTGAGGTCTTGGAAGGGAGAACATGGCCTGTTATTTGTTCTGCTCCTACAATTACTGGGGGATGGCACAAATTTGCATCTGAAAATCATTTGAATGTGGGGGACGTTTGTGTTTTTGAACTGATCCAGAAGATCCAGGGCCTTGCCTTCAAGGTTTCCATCTTTCGAGGTGCAGAAGAACCAAGTTGCCCCATTTCACAAGCAAGTGCCGATGGATTCTGTGAGGAAGTATTTTGTAAAGATGAACTGGAATGTGGTGATGTTACAGTTTAG 1083 0.4072 MTSACNKNPKPIAVRFFKNIFRASLAHGLLKLPTIFTKKYGDGMSNPVSLKSPDSTRWKIYWTKHDGEIWFQKGWKEYATYYGLDHGHLLFFEYEGTSHFNVHIFDTSAVEIDYPSNGTHHGKDSSHVEISDDPVEILDEKFSCQKTREKSTVSSPQPTKKMKAGLTTNVKKRPNVVNLHRHVQIRSIKSQKAKFVKHELDEDESRGIFHTERPKGEQLTSTALNRATAFRSENPSFKLVMNPSFIYGDYLEIPPEFAEIYLKKTHAVVILEVLEGRTWPVICSAPTITGGWHKFASENHLNVGDVCVFELIQKIQGLAFKVSIFRGAEEPSCPISQASADGFCEEVFCKDELECGDVTV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01091 360 SUPERFAMILY DNA-binding pseudobarrel domain 230 326 IPR015300 -
Gma09g01091 360 CDD B3_DNA 235 326 IPR003340 GO:0003677
Gma09g01091 360 ProSiteProfiles B3 DNA-binding domain profile. 236 328 IPR003340 GO:0003677
Gma09g01091 360 PANTHER B3 DOMAIN-CONTAINING 11 326 - -
Gma09g01091 360 Gene3D - 11 109 IPR015300 -
Gma09g01091 360 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Gma09g01091 360 SUPERFAMILY DNA-binding pseudobarrel domain 15 108 IPR015300 -
Gma09g01091 360 CDD B3_DNA 15 106 IPR003340 GO:0003677
Gma09g01091 360 Gene3D - 217 329 IPR015300 -
Gma09g01091 360 SMART B3_2 237 328 IPR003340 GO:0003677
Gma09g01091 360 SMART B3_2 16 108 IPR003340 GO:0003677
Gma09g01091 360 Pfam B3 DNA binding domain 237 327 IPR003340 GO:0003677
Gma09g01091 360 Pfam B3 DNA binding domain 23 107 IPR003340 GO:0003677
Gma09g01091 360 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01091 Gma-Chr9 26059183 26061647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01091 9 326 B3 DNA Binding Superfamily AT3G18990 30.725 5.10e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma09g01091 B3 7.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01091 - - gmx:100815331 748.814