Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01079 ATGAGTTCTGGTTCAGTCACCAAAGCACCACCACCCTCTTCTTCTTCATCACCCAACTCTTCCTCTGAGTCCCTTGATGGCTTGAAGTTTGGCCAGAAAATCTACTTTGAGGATGTGAGTGTTGCAGCAACAACAACAACTCAAGGGGCCTACAAAACAAGTCGTGTGGTTTCTTCCCCTTCTTCTGCTTCAAAGAAGGGAAGGGGTGGTTCTTTGCAACCTCCTAGGTGTCAGGTTGAGGGCTGCAAAGTAGATCTGAGTGGTGCTAAGGCTTACTATTCTAGGCACAAAGTTTGTACCATGCACTCCAAGTTCCCTACTGTTATTGTTGCTGGTTTGGAGCAAAGGTTTTGCCAACAGTGTAGCAGGTTTCATCTGCTTTCTGAATTTGATGAAGGAAAACGAAGCTGCCGCAGGCGACTTGCTGGTCATAATGAGCGCCGACGAAAGCCCCCGCCAAGCTCCACACTAGCCTCTCACTATGGCAGACTCTCTACGCCTATTTTTGATAACAGTGGCCGAGCCGGTGGCTTTCTGATGGAATTTGCTTCATACCCAAAGGTTACATTGCGAAATACACTGCCAACACAAAGATCAGCCGAGCCGGCTCTCGGTAACCATGCTGCAACACTTACCTGGCAAGGAAGCTCAGACACACCATCTGAATTTTTCCTGCAAGAATCAGGGAGTGGTGGAACAAGCTTCCTTGGTTCCAAACATCCCTTACTGGAAAGTTACACTGGAGTGACTGACTCAAACTGTGCTCTCTCTCTTCTGTCAAGACAAACCTGGGGTTCCAGAAACACAGCCCCAGCAACAAGTGTTGAGCTGAACAACAACTTGTTGAATTTCAATGGGACATCCATGACACAATTTTCCGCGGCTTCTTCACAAGCTGCAGCCATCCATCAACTTCCAAATGCCACCTCATGGTTGTACCTAAAGGGAGTTGGTTCTGGTGATTGTTCGCCTGAGGGTGTCCCCGATCTTGGTCTAGGTCAAATTTCGCCGCCTCTTGATAGCCATCTTCATGGTGAGCTTAATGTGTCACAGCAGGGCAGGAGGCATTACATGGATCTAGGGGAATCCAGGGCATGTGAGTCTTCTCACTGGTCTCTTTGA 1122 0.4848 MSSGSVTKAPPPSSSSSPNSSSESLDGLKFGQKIYFEDVSVAATTTTQGAYKTSRVVSSPSSASKKGRGGSLQPPRCQVEGCKVDLSGAKAYYSRHKVCTMHSKFPTVIVAGLEQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNERRRKPPPSSTLASHYGRLSTPIFDNSGRAGGFLMEFASYPKVTLRNTLPTQRSAEPALGNHAATLTWQGSSDTPSEFFLQESGSGGTSFLGSKHPLLESYTGVTDSNCALSLLSRQTWGSRNTAPATSVELNNNLLNFNGTSMTQFSAASSQAAAIHQLPNATSWLYLKGVGSGDCSPEGVPDLGLGQISPPLDSHLHGELNVSQQGRRHYMDLGESRACESSHWSL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01079 373 MobiDBLite consensus disorder prediction 141 160 - -
Gma09g01079 373 MobiDBLite consensus disorder prediction 1 25 - -
Gma09g01079 373 Pfam SBP domain 77 150 IPR004333 GO:0003677
Gma09g01079 373 Gene3D - 68 138 IPR036893 GO:0003677|GO:0005634
Gma09g01079 373 SUPERFAMILY SBT domain 75 155 IPR036893 GO:0003677|GO:0005634
Gma09g01079 373 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
Gma09g01079 373 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 1 373 - -
Gma09g01079 373 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 373 IPR044817 GO:0003677
Gma09g01079 373 MobiDBLite consensus disorder prediction 50 74 - -
Gma09g01079 373 MobiDBLite consensus disorder prediction 50 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01079 Gma-Chr9 23256100 23260729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01079 28 373 SBP-box Gene Family AT2G42200 41.555 1.85e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma09g01079 SBP 5.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01079 - - gmx:100789301 708.368