Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01062 ATGGTGAAAACTCGCTTTGATCGGGATCGGATTTTGCCCGACTTGGGAAAGCATGGTTTGGTTCGGATTTGGAGGAAAGAAGAGGGGAAAGTGTGGGAGAGATCTCATTCGGAGAAACGGTGTCGTTTCGCCCACGTGGACGGTGTTGCTACCCCCCTCGTCCTACTACCGCTTGCTACCGGTTTTTCCATAGCTACACTCTTTACACCCTCTTTTTTCTTCTTCTCCACCGACAACACTCTTTTCTTCTCGGCCCCTATTCCCCTCATCCGATGCGAACTCCAACGATTTCCTTTCCTCAAATTCTCGCGCGATAAGATATGTTTTTCGCCTTGTGAGGTTTTGGCTACCGCGATGGCGTCCAAAGGTCCCAGGTCCAGGATTGATCACGAGAGCAGAGCCAAACGGCAGAAGGCTCTTGAAGCTCCAAGGGAGCCTCGGCGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTTTGGCTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAAAAAGTAGCTTTAAGAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAAAAGATGAAGGAAGAGGAGCAGCGGTTAAGAAAGGTTGCACTTAATATTTCTAAGGATGTCAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTCTATTAGGGCAAACTGAGAGGTACTCAACAATGTTGGCTGAAAATCTTGGGGATCCTTATAAATCAGCAGAGAATAATTCTGCAGAGCACCGCAAGAGTATTCATTGCAAAGATGTACATGATGTTATTAATGAACCTAAGGAAGCTGATGTTGTGGAGTATCAATCAGATGCAGCTGACAATGATGAAGAGTATGATGTGCAATCTGATGATGAATTGGAGGATGATGAGCGAACAATTGAGCAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCTGCTTTGCGTGATGAAATGGATCTTCCGATTCAGGAGTTACTTAAACGTTATGCTGGGGAGAAAGGAGAATCGGTAATGAAAGGAAGTAGTCCAGAGCATAGTGAAGATGGTGGGAAAATAGTTAGAGCTGGTGATGAAAACAGAGATGATCTTTTATCTGTCAGCAAAGTTGACACAAGCAACTCCAGCATGGTCTCTGGTCGACGTTGTGATGAAAGTAATGGTGATGTTGCTACACCAACAAACAATCTATCTCAATGTGAGGATGGTCAATCTGAAAATCTAAAAGAGACTCCCAGTGAGACAGCCAATGAAGATTTTGCATATGATTTTACCGATGAAGAGGAAGATGGTGACTTTTTGCTTGTCACAGAAGATAAGGATGATGAAACAACCTTATCTGAGGAGGAAAAAATGGAAAGAGTTGATACAATTGATCCCAAGGATGAGattgcattattACAAAAGGAGAGTGACATGCCTGTCGAGGAACTGCTTGCAAGATATAAAAGGGACCCAAGTGACGATGAAGATGGGGAATATGAATCTGATTATGCTTCTGCTTTATCAGAGAAACATTCGGATTCTCCAGTCCATCAAGATGCTGGGCAGAAGGATCCTGCCATTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGCTGCCACCATACAGTTCCAGGAAGAACAGAGGGAATCACCTCGTGAAAATTTGGAAAAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCCACCGGAAACACCTTCTCCACAACTAATGTGCGTACAAAGTTCCCTTTTCTACTCAAGTACTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTCAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACAATTATGACTATTTCTTTGCTTGCACATCTTGCTTGTGATAAAGGGATTTGGGGCCCACATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACTTATTTTGGAAGTGCAAAGGAGCGAAAACTTAAAAGGCAAGGATGGTTAAAACCTAACTCCTTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGACGAATTCTCTTGACTGGTACGCCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGATGGAGAAGAAAAAATTAATAAGGAGGTTGTTGATCGCCTTCATAATGTACTTCGTCCATTCTTACTCCGTCGACTTAAGCGAGATGTGGAGAAGCAACTTCCAATGAAGCACGAACATGTCATATACTGTAGACTATCAAAGAGGCAACGGAATTTGTATGAAGATTTCATTGCTAGTTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCCGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATGTGTGGTATTGATATTCAGTTAAGTTCTTCTGTTTGCTCCATACTTTTGCCTAGTCCCTTTTCAACAGTGGACCTAAGAGGTTTGGGTCTTTTATTCACTCATCTTGACAGCATGGCTGCTTGGGAAAGTGATGAAGTACAAACTATTGAGACCCCTGCGACTTTAATCATGGAACGTACTGATATGACCGAACTAGAAGTAATTCGGCCACAGAAATGTCAAAAAAAGTTGCAAGGAACAAACATTTTTGAAGAAATCCAACGGGCAATCTGGGAAGAGAGGCTAAAAGAGGCCAAGGAACGTGCAGCAGCTATTGCATGGTGGAATTCCTTGAGATGTAAAAGAAGACCCATCTACTCGACAACTCTAAGGGATCTTGTTACCTTAAGACATCCTGTATATGATATTCATCAGGTTAAAGCAGACCCTGTTTCATACTTGTACTCATCAAAGCTAGCTGACATTGTTCTCTCCCCGGTTGAACGATTTCAGAAGATGACTGATGTGGTTGAGAGCTTCATGTTTTCAATTCCAGCTGCTCGGGCACCCTCTCCTGTTTGCTGGTGCAGTACAAGTGAGACAAATGTGTTTCTGCACCCATCTTACAAGCAGAAATGCTCTGAAGTTCTGTTACCGCTACTAGCACCAATCAGGCCTGCAATTGTCCGCCGGCAAGTGTATTTCCCCGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTAGCAATTTTGTTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGGTATACATACATGCGCTTAGATGGATCAACCCAGCCGGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACAAATCCCAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACAGTTATTTTTTATGATAGTGACTGGAATCCTGCTATGGATCAACAGGCTCAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGGGTTATAATACCGAGTTCTTCAAGAAGCTCGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAATATTGTGAAGGAAAAAGACCAGAACAATGGGGAAGTTTCTGTAACTAATGATGATGTTGAGGCTGCATTAAAATGTGTAGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAATCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAGGATGATGACACTGCAGAATTAGGTGAATCTGTTTCGAATTTAAATAAAGAGAATGTGTTAATGTTAAACGGAACTGATCATAAGGAAGATAGACCGACACACTCTGTTCCTGTCAAAGAAGATGATCCTGACATGTTGGCTGATGTCAAACAGATGGCCGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAGAATGAGCTACGCCCTATTGATCAATATGCCATTCGTTTCCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCCGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTATGCAACTACGGCATATCGACAGCATGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTCGAATATGAAGCTAGGCAGAAAGAAGCTGAGGAAGAAACCTGTGATTCTAAAAAGACTCCAACACCAGGAGATTCGAAGCCCAAATCTAAAAAGAAACCCAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGTTCTTTAACCTCTGGCTTGAGACCTGTGAAAGAAGAGTCACAAGCACAGCCTATGAACATAGATGATGAGAATGTCCCTGGTCTAGATTTTCAGTCTCCAAATTCAACCATGCAGAAAAAACGTAAGAAATCTAAATTAACAACTGATGGTGAAGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATTCTCCTGACATTTATGCTTCCGATTTGGAATCCAACTCATTAGTTGTGCAGGATGAACATGCAGAATCAAAGACTTGTGAAAGTCTGGTTGATTTAGAACAGAAAACAGCAAGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCTATCCCTTTAAAACAGGTCTGGATGATAAAACCAGAAAAATTGAAAAAGGGAAATCATTGGTCCAAAGATTGTATTCCACCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGAAACACTTTATGGCATGAGTGGTGGTGGGTCATACAGGGGAAGATATCGTCATCCTGTCCAATGCTGTGAGAGGTTCAGAGAACTATTCCAAAAGTATGTCTTGCTGTCAATGGACAATGCAAATCATGAGAAGATCAACAGTCCGGGCTCTGGAAAGGCTCTGCTTAAAGTTACAGAGGATAACATTCGGATGCTGTTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTACTGCTGCAGAAGCATTTTTTTGCATTGCTTTCATCTGTCTGGAAAGTGGCATCACACGTTGACCACAGGCGAAATCCATCACCCTCCTGTAATGGTCTCTATTTCGATCAGAGTTTCTATACTTCCATTGGCCAGCCTTCACAAAATTCCTTGAAGAAATCCTCTGAAAGGATGGCATTTGCAAATTTGGCCCCGAGCAAGAATTTAGTAGCAGCTGCACTTGATGATATCACAACTAGGCAAGTGAATGACAAAGTCATTCTGTCTAACCAAGGGGAAGACATGCCAGTGAGTGCAGATCAGCTGGATATAACACTGGAGTTTGCAAAAGAGGATAGCGACGTCCTATCTTCATTTCCATCTGTTATAAATTTATCAATACATGGGACTGAACCAACACCATCTTTAAATAAGCTAACAGGAGAAGATGATCTTAAAGTTGGTTTGTTCATTGCTGAGAATCGTTTCAGGGAGGCTGCAAGAGTTTGTGGAGAAGACAGCTCTGGATGGGCATCATCTGCATTCCCAACCAACGATACAAGGTCTCGACCTGGATCCAGGTTACAATCCTCCGGAAAGCGGAAGTCTTCTGTATCTGACTCTTCTAAGCCTTCTAGGTCAAAGTCCAAAAAAGCTTCAATGGATCGTAGTGAAATGCATCCCTATCAGGCTGACTCAATGTTCCAGTCAATGCCATCACTTAAAGATCTGAGAATTGATCTCACTTCATTAACTACTGATGAAGTTGGAATTGATGGTATGGATAGCATTTTCTCCTTTGACTTGAATGGGGAAAGTTCATTGGAAATGGAGAGTGTTGGAATGATCCCACATGATTATGTTGCTGGTTTAATCTCAGACCTTGATGATAGTACAGCATTCCCTGAATATACTGACATTAGATAA 6483 0.4155 MVKTRFDRDRILPDLGKHGLVRIWRKEEGKVWERSHSEKRCRFAHVDGVATPLVLLPLATGFSIATLFTPSFFFFSTDNTLFFSAPIPLIRCELQRFPFLKFSRDKICFSPCEVLATAMASKGPRSRIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLGDPYKSAENNSAEHRKSIHCKDVHDVINEPKEADVVEYQSDAADNDEEYDVQSDDELEDDERTIEQDEALITKEERQEELAALRDEMDLPIQELLKRYAGEKGESVMKGSSPEHSEDGGKIVRAGDENRDDLLSVSKVDTSNSSMVSGRRCDESNGDVATPTNNLSQCEDGQSENLKETPSETANEDFAYDFTDEEEDGDFLLVTEDKDDETTLSEEEKMERVDTIDPKDEIALLQKESDMPVEELLARYKRDPSDDEDGEYESDYASALSEKHSDSPVHQDAGQKDPAIPMDEDIKSGEHLAATIQFQEEQRESPRENLEKRESEDIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVDGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMCGIDIQLSSSVCSILLPSPFSTVDLRGLGLLFTHLDSMAAWESDEVQTIETPATLIMERTDMTELEVIRPQKCQKKLQGTNIFEEIQRAIWEERLKEAKERAAAIAWWNSLRCKRRPIYSTTLRDLVTLRHPVYDIHQVKADPVSYLYSSKLADIVLSPVERFQKMTDVVESFMFSIPAARAPSPVCWCSTSETNVFLHPSYKQKCSEVLLPLLAPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNIVKEKDQNNGEVSVTNDDVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDDTAELGESVSNLNKENVLMLNGTDHKEDRPTHSVPVKEDDPDMLADVKQMAAAAAAAGQAISAFENELRPIDQYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADYATTAYRQHVEALAQHQLMEELEYEARQKEAEEETCDSKKTPTPGDSKPKSKKKPKKAKFKSLKKGSLTSGLRPVKEESQAQPMNIDDENVPGLDFQSPNSTMQKKRKKSKLTTDGEEEKRLKKSKKSKRDSPDIYASDLESNSLVVQDEHAESKTCESLVDLEQKTASRSKMGGKISITPIPLKQVWMIKPEKLKKGNHWSKDCIPPADFWLPQEDAILCAVVHEYGPNWSLVSETLYGMSGGGSYRGRYRHPVQCCERFRELFQKYVLLSMDNANHEKINSPGSGKALLKVTEDNIRMLLDVASEQVNRELLLQKHFFALLSSVWKVASHVDHRRNPSPSCNGLYFDQSFYTSIGQPSQNSLKKSSERMAFANLAPSKNLVAAALDDITTRQVNDKVILSNQGEDMPVSADQLDITLEFAKEDSDVLSSFPSVINLSIHGTEPTPSLNKLTGEDDLKVGLFIAENRFREAARVCGEDSSGWASSAFPTNDTRSRPGSRLQSSGKRKSSVSDSSKPSRSKSKKASMDRSEMHPYQADSMFQSMPSLKDLRIDLTSLTTDEVGIDGMDSIFSFDLNGESSLEMESVGMIPHDYVAGLISDLDDSTAFPEYTDIR 2160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01062 2160 Coils Coil 1565 1585 - -
Gma09g01062 2160 Pfam HSA domain 145 211 IPR014012 -
Gma09g01062 2160 CDD SF2_C_SNF 1158 1293 - -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 2026 2078 - -
Gma09g01062 2160 Gene3D - 599 875 IPR038718 -
Gma09g01062 2160 PANTHER HELICASE SRCAP 120 2067 - -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 472 559 - -
Gma09g01062 2160 Gene3D - 876 936 - -
Gma09g01062 2160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 854 1340 IPR027417 -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 306 336 - -
Gma09g01062 2160 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 642 807 IPR014001 -
Gma09g01062 2160 Gene3D - 1754 1815 - -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 125 148 - -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 402 446 - -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 368 401 - -
Gma09g01062 2160 SMART ultradead3 626 819 IPR014001 -
Gma09g01062 2160 ProSiteProfiles Myb-like domain profile. 1758 1811 IPR001005 -
Gma09g01062 2160 Coils Coil 1510 1530 - -
Gma09g01062 2160 CDD DEXQc_SRCAP 630 852 - -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 368 451 - -
Gma09g01062 2160 Gene3D - 1134 1389 IPR027417 -
Gma09g01062 2160 ProSiteProfiles HSA domain profile. 140 212 IPR014012 -
Gma09g01062 2160 Coils Coil 324 353 - -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 306 332 - -
Gma09g01062 2160 SMART helicmild6 1199 1282 IPR001650 -
Gma09g01062 2160 SUPERFAMILY Homeodomain-like 1756 1813 IPR009057 -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 533 559 - -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 1654 1682 - -
Gma09g01062 2160 SMART bromneu2 141 212 IPR014012 -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 482 524 - -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 2058 2077 - -
Gma09g01062 2160 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1173 1323 IPR001650 -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 2029 2057 - -
Gma09g01062 2160 Pfam Helicase conserved C-terminal domain 1172 1282 IPR001650 -
Gma09g01062 2160 Pfam SNF2-related domain 647 919 IPR000330 GO:0005524|GO:0140658
Gma09g01062 2160 MobiDBLite consensus disorder prediction 1572 1688 - -
Gma09g01062 2160 PANTHER HELICASE SRCAP-RELATED 120 2067 - -
Gma09g01062 2160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 852 IPR027417 -
Gma09g01062 2160 MobiDBLite consensus disorder prediction 1572 1595 - -
Gma09g01062 2160 Coils Coil 1386 1406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01062 Gma-Chr9 22044616 22066836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01062 650 922 RAD5 or RAD16-like Gene Family AT5G43530 29.814 9.14e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma09g01062 SNF2_N 8.7e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01062 - - gmx:100795613 3878.56