Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01005 ATTCCATTTTTTGCATAAATCGCAAGCTTTCGATTTCACCTCATTTCTGGATTCCAGTTGCATAAACCACAAGCTTCCAATTTTACCTCACTTCCACCTATGTTGGTTAAAGAAGCTCACTTCACTTGGTTGTCCACCTGTGTTGCTTGAAGAAACTGACTTCACTTGGGCTGCAAGGATTAACATTGGAATGATCTTGATGGATGAGAATGCTGATAAGATTGTTGCTCAAATTAAAGATGTTGATCCTGATAAGTGGAATGATGTTGTTAAAGTGGGTAAGACATATATGATACAAAATTTTGAATTTGAAAAGAATATTGGACAGTTTAGGCCAACAAAGCATGCCTTTAAACTGAACTTTGTCACTTCTACAAAAGTAAAAGAGCAAGATTTTCCAATGATACCAGAAATGGTGTATGGTTTTACACTATTTGATGATGTTCTTACTGGCAGTGCCAATCCTGACTACTTAATAGTTGATGTATTGCAATGGAGCCTGGATGGAAAACCCAAAAAGGTGGTCCTCACTATGAAGGATAAGTGTGGTACCATTGTCAATTGTACTCTGTGGGAGGATTTTACATTCTTGCTGAAAGATTATTTGGACAAACATCAAAATGGACCAATTATACTTCTGCTTCATTTGGCAAAAATTAAGGAAGCACGAGGGGCTTATGCAGTGTCCATTCAAAATTTAATGTATGGTTTTAGGCTATTTATCAATGAAGATTTGAAGGACATTGAAGATTATAAAAATAGATTTGATCCGAGTCAACTAAGCCTTGTGACTTGCAGTCAAAGGTTGAGTCAAGTCTCTTATTCTGCCCAACCTACTTCAGAGGATAGATTTCTTTATAATGCTCAAGTTAAATCATTAAGTGAACTTTGTGAGTTGAAAAAGGAATGTGTTTGTGTGGCTGTTGCCATGATAACCAAGTTCTTAGTTGGCAATGGTTGGATATATGAAAGTTGCCCAAAATGTAACAAGAAAGTGGAATGTGAGAAATTTCCATACACCTGTCAAGGTTGTGGAAATGAAAGTGCAACAATTGTGGCCAGGAAGGTGAATTTGATCCAAAGGACATTGTAG 1093 0.3669 FHFLHKSQAFDFTSFLDSSCINHKLPILPHFHLCWLKKLTSLGCPPVLLEETDFTWAARINIGMILMDENADKIVAQIKDVDPDKWNDVVKVGKTYMIQNFEFEKNIGQFRPTKHAFKLNFVTSTKVKEQDFPMIPEMVYGFTLFDDVLTGSANPDYLIVDVLQWSLDGKPKKVVLTMKDKCGTIVNCTLWEDFTFLLKDYLDKHQNGPIILLLHLAKIKEARGAYAVSIQNLMYGFRLFINEDLKDIEDYKNRFDPSQLSLVTCSQRLSQVSYSAQPTSEDRFLYNAQVKSLSELCELKKECVCVAVAMITKFLVGNGWIYESCPKCNKKVECEKFPYTCQGCGNESATIVARKVNLIQRTL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01005 363 PANTHER REPLICATION FACTOR A 1, RFA1 61 335 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma09g01005 363 Pfam Domain of unknown function DUF223 64 158 IPR003871 -
Gma09g01005 363 SUPERFAMILY Nucleic acid-binding proteins 290 349 IPR012340 -
Gma09g01005 363 Gene3D - 56 131 IPR012340 -
Gma09g01005 363 CDD RPA1_DBD_B_like 168 256 - -
Gma09g01005 363 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 61 335 - -
Gma09g01005 363 SUPERFAMILY Nucleic acid-binding proteins 62 129 IPR012340 -
Gma09g01005 363 CDD RPA1_DBD_A_like 62 127 - -
Gma09g01005 363 SUPERFAMILY Nucleic acid-binding proteins 168 257 IPR012340 -
Gma09g01005 363 Gene3D - 134 261 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01005 Gma-Chr9 20075383 20077716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01005 66 344 Core DNA Replication Machinery Family AT5G08020 23.490 4.31e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01005 - - gmx:102662874 368.622