Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g01001 ATGATGAGCCAGAACAACTTGTTGCAGCCTTTCAACAGTAAATTGGTCCATAGAGGGCATAAGTTGCTTATTACAATATTTGCTGGTAtccttccagatcagcagaggttgatatttgttggtaaacaacttgaggatggaagaacccttgttgattacaatattcagaacgagtccactctacatttggtgttgaggcttcgtggaggtatgcaaatatttgtgaagactctaatagggaagaccattaccttggaggtggaaagctgtgatactattgacaatgtgaaagctaagattcaggacaaggagg 313 0.1086 MMSQNNLLQPFNSKLVHRGHKLLITIFAGILPDQQRLIFVGKQLEDGRTLVDYNIQNESTLHLVLRLRGGMQIFVKTLIGKTITLEVESCDTIDNVKAKIQDKE 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g01001 104 SUPERFAMILY Ubiquitin-like 21 71 IPR029071 -
Gma09g01001 104 SMART ubq_7 3 66 IPR000626 GO:0005515
Gma09g01001 104 Gene3D - 14 70 - -
Gma09g01001 104 ProSiteProfiles Ubiquitin domain profile. 29 70 IPR000626 GO:0005515
Gma09g01001 104 Gene3D - 71 104 - -
Gma09g01001 104 ProSiteProfiles Ubiquitin domain profile. 71 104 IPR000626 GO:0005515
Gma09g01001 104 PANTHER - 29 104 - -
Gma09g01001 104 PRINTS Ubiquitin signature 26 46 IPR019956 -
Gma09g01001 104 PRINTS Ubiquitin signature 47 68 IPR019956 -
Gma09g01001 104 PANTHER UBIQUITIN 29 104 - -
Gma09g01001 104 SUPERFAMILY Ubiquitin-like 69 103 IPR029071 -
Gma09g01001 104 Pfam Ubiquitin family 73 104 IPR000626 GO:0005515
Gma09g01001 104 Pfam Ubiquitin family 24 68 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g01001 Gma-Chr9 19967425 19968441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g01001 29 71 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 88.372 1.50e-22 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g01001 - K08770 gmx:106797352 144.436