Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00996 ATGAGAACTTCATGGGCGGATTCTGCTGACAACTCAACCATTGGTTCTGGCAATAGCAATTCCTCGGCTTGCCCTCCCCGGGGAGCTTATGTGCCGCCGCATCTTCGGAACCGGGTATTCTCGTCCGAGGTTCCTCCGGCAGCGTCACACCCAGTGGCTCCGGGGAATGACCGGGTGAATCATGGTGGTCCAGCTCCTCATCAGGGTAGTGGTTACTTTAAAGCCGATCATGGGCGGCAGCCGCAGCAAGGATTTGGATATGGTTCTGGTTTTCAGAGTGGTGGTGGTGGTGGCTGGAATGGTAGAGGGGCGGGAAGGGACCGTGGGAGGCGCGAGGCGAACCCTTTTGAGAATGTTGAGGCTGAGGATCAATCTTTTAGTGAGCTAGAGAACACAGGGATTAACTTTGATGCATATGATGATATCCCTGTGGAGACAAGCGGGGAGAATGTGCCACCGCCTGTGAATACATTCGCGGAAATAGATTTGGGTGAGGCGTTGAATCAGAATATACAGAGGTGCAAGTATGTGAAACCAACCCCGGTTCAAAGGTATGCCATTCCAATTTCTCTTGCGGGGCGAGACTTGATGGCCTGTGCTCAGACTGGGTCAGGAAAGACAGCTGCATTTTGCTTCCCTATTATAAGTGGAATCATGAGGGAGCAATATGCTCAAAGGCCACGTGTGGCTCGAACTGCTTATCCGCTGGCACTTATCCTCTCCCCTACAAGGGAGCTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAAGTTGTGGTTGCTTATGGAGGAGCACCAATCAACCAACAGTTACGGGAGCTTGAGAGAGGCGTTGATATTCTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATACTTGGCTCTTGATGAGGCAGATCGGATGCTAGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACGCTGTTGTTTAGTGCCACATTTCCCAAAGAGATACAGGCTCTTGCCTCGGATTTTCTTTCAAATTATGTGTTTCTGGCTGTTGGAAGGGTCGGTTCTAGTACTGATCTAATTGCTCAAAGAGTAGAATACGTGCTCGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCACGCTCAGAGGGAAACTGGAGTTAATGGCAAGCAAGGTTTGACATTAGTTTTTGTGGAAACGAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGGTTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGTAAGTCTGTTTTGCTAA 1374 0.4884 MRTSWADSADNSTIGSGNSNSSACPPRGAYVPPHLRNRVFSSEVPPAASHPVAPGNDRVNHGGPAPHQGSGYFKADHGRQPQQGFGYGSGFQSGGGGGWNGRGAGRDRGRREANPFENVEAEDQSFSELENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQALASDFLSNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRETGVNGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQVSLFC 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00996 457 CDD DEADc_DDX3_DDX4 157 377 IPR044763 GO:0003724|GO:0005524
Gma09g00996 457 Pfam DEAD/DEAH box helicase 180 359 IPR011545 GO:0003676|GO:0005524
Gma09g00996 457 Gene3D - 112 373 IPR027417 -
Gma09g00996 457 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 39 452 - -
Gma09g00996 457 MobiDBLite consensus disorder prediction 1 25 - -
Gma09g00996 457 MobiDBLite consensus disorder prediction 104 118 - -
Gma09g00996 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 373 IPR027417 -
Gma09g00996 457 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Gma09g00996 457 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 39 452 - -
Gma09g00996 457 MobiDBLite consensus disorder prediction 1 127 - -
Gma09g00996 457 SMART ultradead3 175 386 IPR014001 -
Gma09g00996 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 452 IPR027417 -
Gma09g00996 457 Gene3D - 374 455 IPR027417 -
Gma09g00996 457 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 371 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00996 Gma-Chr9 19824148 19828452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00996 138 452 Eukaryotic Initiation Factors Gene Family AT3G19760 28.254 7.17e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00996 K11594 - gmx:100818326 845.114