Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00988 ATGAGTGGCATTTCTGTCCATTTGGGGTATTTTGGGGTGCAGAAAGCAAAAGATGGGTTTAAGGAAGTAATTACCCTCATAGGGAGAAGTTTCTCGAATATAGAAGTGCGGTTACAAATATCAGGAATTCATTTGCGCTTCCGAACAACAAAACAAAGTCCCCCCCCTCTCTCTCTCGGTGTCTGGAACAGAGATTGCGTTTGTTTCGCGAATTGTGAAGCCGCTGGTGAAATAGCACCAAATATGAGGGGAAGAAGCTGCAGTTACAGCCCATCACCTTCACCTCCAAGGCGTTACAGCCGAAGAAGGCACAGCCTTAGCCCTAGGGGCCGATATAGAGGATGTGATAGGGATTTGCCAACAAGTCTTCTGGTTCGAAACCTCAACAGAGATTGCAGgccagaagatctgcatggtccatttggccaatttggtcctcttaaggatgtttacctgcctcgagattattatactggGGAGCCAAGAGGTTTTGGGTTTGTCCAATATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGACGGTCGAATTCTTCTTGGTCGTGAGATAACTGTAGTGTTTGCTGAAGAAAACAGAAAGAAACCTGCTGAAATGAGAGCAAGAGAACACAGGAGGGATCGATCGCATGATTACAGGCGATCTTCACGAACCTATTCTCCTAGTCCAGACTATTCTCCTTCTCCAAGACGAAGGCGACATTACAGGTCAATCTCACCAAGGGACAGAAAGTATAGGGATCGATCATACTCTAGATCATCTTATGCATCAAGAAGCCGCAGCAGAAGTAGGAGTTACAGTAGGAGTTTGAGCCGAAGTCCGGGCTACTCTAGGTGA 861 0.4239 MSGISVHLGYFGVQKAKDGFKEVITLIGRSFSNIEVRLQISGIHLRFRTTKQSPPPLSLGVWNRDCVCFANCEAAGEIAPNMRGRSCSYSPSPSPPRRYSRRRHSLSPRGRYRGCDRDLPTSLLVRNLNRDCRPEDLHGPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGRILLGREITVVFAEENRKKPAEMRAREHRRDRSHDYRRSSRTYSPSPDYSPSPRRRRHYRSISPRDRKYRDRSYSRSSYASRSRSRSRSYSRSLSRSPGYSR 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00988 286 MobiDBLite consensus disorder prediction 262 286 - -
Gma09g00988 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Gma09g00988 286 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 82 279 - -
Gma09g00988 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 193 IPR000504 GO:0003723
Gma09g00988 286 SUPERFAMILY RNA-binding domain, RBD 121 225 IPR035979 GO:0003676
Gma09g00988 286 Gene3D - 115 228 IPR012677 -
Gma09g00988 286 MobiDBLite consensus disorder prediction 203 225 - -
Gma09g00988 286 MobiDBLite consensus disorder prediction 83 114 - -
Gma09g00988 286 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 82 279 - -
Gma09g00988 286 MobiDBLite consensus disorder prediction 203 286 - -
Gma09g00988 286 SMART rrm1_1 122 195 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00988 Gma-Chr9 19699892 19703441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00988 67 245 Eukaryotic Initiation Factors Gene Family AT4G34110 25.000 9.00e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00988 K12900 - gmx:100816913 246.899